View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14182_low_6 (Length: 270)
Name: NF14182_low_6
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14182_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 45128869 - 45129108
Alignment:
| Q |
12 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
111 |
Q |
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| T |
45128869 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
45128968 |
T |
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| Q |
112 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
211 |
Q |
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| T |
45128969 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
45129068 |
T |
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| Q |
212 |
agaattcagcccttgaattgaaatcagttgcatattctag |
251 |
Q |
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| T |
45129069 |
agaattcagcccttgaattgaaatcagttgcatattctag |
45129108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 40280725 - 40280963
Alignment:
| Q |
13 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
112 |
Q |
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| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
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| Q |
113 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
212 |
Q |
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| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
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| Q |
213 |
gaattcagcccttgaattgaaatcagttgcatattctag |
251 |
Q |
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| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctag |
40280963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
15 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
80 |
Q |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 6632284 - 6632336
Alignment:
| Q |
198 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattcta |
250 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattcta |
6632336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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