View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14182_low_7 (Length: 266)
Name: NF14182_low_7
Description: NF14182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14182_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 6265022 - 6265265
Alignment:
| Q |
17 |
gtcattaactactcggatcaaccacatgactg--aaaatttatcgattttatattttatataagaatgatcacagatacttcatacccctgtataagttc |
114 |
Q |
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| T |
6265022 |
gtcattaactactcggatcaaccacatgactgcaaaaatttattgattttatattttatataagaatgatcacagatacttcatacccctgtataagttc |
6265121 |
T |
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| Q |
115 |
acattaaaattctttccaaagttatacttgtacctcaaacctgcttccatctggaaatgtttgccaagtaggcttaaattcaacaatatgatcactaaca |
214 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6265122 |
acattaaaattctttctaaagttatacttgtacctcaaacctgcttccatctggaaatgtttgccaagtaggcttgaattcaacaatatgatcactaaca |
6265221 |
T |
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| Q |
215 |
caaagaagccattccatctctctttgccacattgctttcttctc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6265222 |
caaagaagccattccatctctctttgccacattgctttcttctc |
6265265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 31129767 - 31129867
Alignment:
| Q |
159 |
ttccatctggaaatgtttgccaagtaggcttaaattcaacaatatgatcactaacacaaagaagccattccatctctctttgccacattgctttcttctc |
258 |
Q |
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||||||| |||||||||||||||| ||| | ||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
31129767 |
ttccatcaggaaatgtttgccaagaaggtattaattcaacaatgtgatcactaacactaacaagccattccatctctctttgccacatttttttcttctc |
31129866 |
T |
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| Q |
259 |
a |
259 |
Q |
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| T |
31129867 |
a |
31129867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 23782808 - 23782910
Alignment:
| Q |
156 |
tgcttccatctggaaatgtttgccaagtaggcttaaattcaacaatatgatcactaacacaaagaagccattccatctctctttgccacattgctttctt |
255 |
Q |
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|||||||||| ||||| || |||||| ||||| | |||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||| || |
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| T |
23782808 |
tgcttccatcaggaaaagtctgccaattaggcgttaattcaacaatatgatcactaacagaaagaaaccactccatctctcttcgccacattgctttttt |
23782907 |
T |
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| Q |
256 |
ctc |
258 |
Q |
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||| |
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| T |
23782908 |
ctc |
23782910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 34864613 - 34864707
Alignment:
| Q |
161 |
ccatctggaaatgtttgccaagtaggcttaaattcaacaatatgatcactaacacaaagaagccattccatctctctttgccacattgctttctt |
255 |
Q |
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||||||||| |||||||||||| |||| | || |||||||| ||||||| ||||||||||||||| ||||| ||||| |||||| || ||||||| |
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| T |
34864613 |
ccatctggatatgtttgccaagaaggcattaactcaacaatgtgatcaccaacacaaagaagccaatccatttctctctgccacttttctttctt |
34864707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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