View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14183_low_1 (Length: 531)
Name: NF14183_low_1
Description: NF14183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14183_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 40058625 - 40058112
Alignment:
| Q |
1 |
agcataggctcttcaggaaggacaacattgaagatcttgaattttttgaacattgtatatttgggaaaagaagagtttctttcatagttgaagcaaggta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058625 |
agcaaaggctcttcaggaaggacaacattgaagatcttgaattttttgaacattgtatatttgggaaaagaagagtttctttcatagttgaagcaaggta |
40058526 |
T |
|
| Q |
101 |
tttcttatgctggagagtttaatcaaatttgcaaggatagtggaatagttaggcataaacaaattagaggaactcctcgggaaaatggtcttgatcacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40058525 |
tttcttatgctggagagtttaatcaaatttgcaaggatagtggaatagttaggcataaacaaattagaggaactcctcgggaaaattgtcttgatcacta |
40058426 |
T |
|
| Q |
201 |
gaggatggacagaaaaatcatggagatatttatatgtttgatgtcaaatgctaataactctactcttttttgggaagaaacagtgtaataattttttctt |
300 |
Q |
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| T |
40058425 |
gaggatggacagaaaaatcatggagagatttatatgtttgatgtcaaatgctaataactctactcttttttgggatgaaacagtgtaataattttttctt |
40058326 |
T |
|
| Q |
301 |
atttcatgaatagattcacttacactaaatttggtatgaagacacctagaagagatgtgtttggtcatgctccaaaccttaaaaatatgagagtttttgg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40058325 |
atttcatgaatagattcacttacactaaatttggtatgaagaca-ctagaagagatgtggttggtcatgctccaaaccttaaaaatatgagagtttttgg |
40058227 |
T |
|
| Q |
401 |
ttgtgtcccctatatgcacatataaaacggacaatcttaaatcaagggttgaaattgtatgtttttgaggtatcattaaggtgtaaaagagtacaaatat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40058226 |
ttgtgtcccctatatgcacatataaaacggacaatcttaaatcaagggttgaaattgtatgtttttgaggtatcattaaggtgtaaaagagtacaaatat |
40058127 |
T |
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| Q |
501 |
ggtgcatggagaaag |
515 |
Q |
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| T |
40058126 |
ggtgcatggagaaag |
40058112 |
T |
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