View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14183_low_2 (Length: 519)
Name: NF14183_low_2
Description: NF14183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14183_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 215 - 504
Target Start/End: Complemental strand, 11965562 - 11965272
Alignment:
| Q |
215 |
atgaataattaaattagtaaataacaaaaattaaatttatgttaacatgactattttctttataacaaatacacaattttatattccgaatnnnnnnnnt |
314 |
Q |
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| T |
11965562 |
atgaataaataaattagtaaataacaaaaattaattttatgttaacatgactgttttctttataacaaatacacaatttcatcttccgaatcaaattaat |
11965463 |
T |
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| Q |
315 |
tcttgatttatgcaacgaaagaagtaaaagctaataacttaaagaagaggtcat-agcattatgtaccttctaagttttgagccacatttggaaccttgc |
413 |
Q |
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| T |
11965462 |
ttttgatttatgcaacaaaaaaagtaaaagctaataacttaaagaagaggtcattagcattatgtaccttctagtttttgagccacacttggaaccttgc |
11965363 |
T |
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| Q |
414 |
aacattgactgccaccaatacatatacatagtctatcaacttgttcaagaaccttatataagcaattctccaaggtctccaaagtagtatt |
504 |
Q |
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| T |
11965362 |
cacattgactgccaccaatacatatatatagtctatcaatttgttcaagaaccttatataagcaattctccaaggtctccaaagtagtatt |
11965272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 368 - 506
Target Start/End: Complemental strand, 11931122 - 11930984
Alignment:
| Q |
368 |
tagcattatgtaccttctaagttttgagccacatttggaaccttgcaacattgactgccaccaatacatatacatagtctatcaacttgttcaagaacct |
467 |
Q |
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| T |
11931122 |
tagcactatgtaccttctggtgtttgagccacatttggaaccttgtcacattgactgctaccaatacatatatatagtctatcaacttgttcaagaacct |
11931023 |
T |
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| Q |
468 |
tatataagcaattctccaaggtctccaaagtagtatttg |
506 |
Q |
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| T |
11931022 |
tatataagcaattctccaaggtctccaaagtagtatttg |
11930984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 377 - 504
Target Start/End: Original strand, 11850145 - 11850272
Alignment:
| Q |
377 |
gtaccttctaagttttgagccacatttggaaccttgcaacattgactgccaccaatacatatacatagtctatcaacttgttcaagaaccttatataagc |
476 |
Q |
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| T |
11850145 |
gtaccttctagtgtttgagccacatttggaaccttgtcacattgattgctacgaatacatatatatagtctatcagcttgttcaagaaccttatataagc |
11850244 |
T |
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| Q |
477 |
aattctccaaggtctccaaagtagtatt |
504 |
Q |
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| T |
11850245 |
aattctccaaggtctccaaagtagtatt |
11850272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 11965770 - 11965698
Alignment:
| Q |
72 |
gtaacctgcaaaatttacagtgcaatacaaacattactggtgatccgggaac-aaattagagtgatcagaatg |
143 |
Q |
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| T |
11965770 |
gtaacctgcaaaatttacagcgcaatacaaacattattggtgatccaggaacaaaattagagtgatcagaatg |
11965698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 11965838 - 11965797
Alignment:
| Q |
31 |
tttgaactctaatacaacataatattttccctttgagtccag |
72 |
Q |
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| T |
11965838 |
tttgaactctaatacaacataatatttttccttcgaggccag |
11965797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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