View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14183_low_3 (Length: 514)
Name: NF14183_low_3
Description: NF14183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14183_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 294 - 497
Target Start/End: Original strand, 40790508 - 40790711
Alignment:
| Q |
294 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40790508 |
aacaggttttatgtcatgtcaataaataacttgacatatcactttcataacaaagatttcaacaagagacaaaaatactagattttaaaaaagagataat |
40790607 |
T |
|
| Q |
394 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40790608 |
aaatttcatgagcaagtgaaaaagaagatcaattccaatttctgtgacttataagaaattatatccgtataaaatacaagaattgaaagcttgaaattgt |
40790707 |
T |
|
| Q |
494 |
gtac |
497 |
Q |
| |
|
|||| |
|
|
| T |
40790708 |
gtac |
40790711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 40787232 - 40787412
Alignment:
| Q |
13 |
aatatatagcagctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40787232 |
aatatatagcagctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattt------- |
40787324 |
T |
|
| Q |
110 |
ttgtcttttagttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
40787325 |
---tcatttagttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttc |
40787412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 15007608 - 15007803
Alignment:
| Q |
13 |
aatatatagcagctggtattataaca-----gatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctat |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15007608 |
aatatatagcagctggtattataacattgaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctat |
15007707 |
T |
|
| Q |
108 |
aattgtcttttagttatgcctcataattcaaatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttc |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||||||| |
|
|
| T |
15007708 |
aattgtcttttagttaggcctcataattcaaatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttc |
15007803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 52311151 - 52311122
Alignment:
| Q |
171 |
acttgaggtaatattgattctcgttacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52311151 |
acttgaggtaatattgattctcgttacttc |
52311122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University