View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_high_11 (Length: 336)
Name: NF14184_high_11
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 26590620 - 26590946
Alignment:
| Q |
11 |
cgaagaatattataagcttatgtaagtagata--ctcaaataattcaatccaaacagacccatataattgattgacaagagcagcatcaaacaatgaatc |
108 |
Q |
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| T |
26590620 |
cgaaaaatgttataagcttatgtaagtagataaactcaaataattcaatccaaacagacccatataattgattgacaggagcagcatcaaacaatgaatc |
26590719 |
T |
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| Q |
109 |
aaatctcaaaattcattacttataaaacaaattctaagtaattcagtattcattacttaaaaaggagaaaatcgaaccttcttcttctgtttaccaccgc |
208 |
Q |
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| T |
26590720 |
aaatctcaaaattcattacttataaaacaaat-ctaagtaattcagtattcattacttaaaaaggagaaaatcgaaccttcttcttctgtttgccaccgc |
26590818 |
T |
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| Q |
209 |
cagatttggctggcttggaggaaggaggaggagctgccttcttgggtgcctgcaaaaaataaccgacaaaaagaattacagagatgagtattgagaagtg |
308 |
Q |
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| T |
26590819 |
cagatttggctggcttggatgaaggaggaggagctgccttcttgggtgcctgcaaaaaataaccgacaaaatgaattacagagatgagtattgagaagtg |
26590918 |
T |
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| Q |
309 |
tagaaagagatgaaattgaactgatgaa |
336 |
Q |
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| T |
26590919 |
tagaaagagatgaaattgaactgatgaa |
26590946 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 5304173 - 5304233
Alignment:
| Q |
182 |
gaaccttcttcttctgtttaccaccgccagatttggctggcttggaggaaggaggaggagc |
242 |
Q |
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| T |
5304173 |
gaaccttcttcttctgtttgccaccaccggacttggcgggtttggaggaaggtggaggagc |
5304233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 54729782 - 54729842
Alignment:
| Q |
182 |
gaaccttcttcttctgtttaccaccgccagatttggctggcttggaggaaggaggaggagc |
242 |
Q |
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||||||||||||||||||| ||||| || || ||||| || ||||||||||| |||||||| |
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| T |
54729782 |
gaaccttcttcttctgtttgccaccaccggacttggcgggtttggaggaaggtggaggagc |
54729842 |
T |
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