View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_high_5 (Length: 466)
Name: NF14184_high_5
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 8707994 - 8707569
Alignment:
| Q |
16 |
atcaagcaaaaaattaatcatatactcacagcagataatgatgtcacagataatcatatactctttctttaatgcaattcatgctgaaaaacactttctg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8707994 |
atcaagcaaaaaattaatcatatactcacagcagataatgatgtcacagataatcatatactctttctttaatgcaattcatgctgaaaaacactttccg |
8707895 |
T |
|
| Q |
116 |
acagttagaatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcccccttcttcaaaaccaataacactgcttctgga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8707894 |
acagttagaatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcccccttcttcaaaaccaataacactgcttctgga |
8707795 |
T |
|
| Q |
216 |
ctttttctgtgtcaagaatttcatcatgatgatgagatacactagatagaaatcacatggccttacaatgatgcaacttacaatgaaacaaagttcgtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8707794 |
ctttttctgtgtcaagaatttcatcatgatgatgagatacactagatagaaatcacatggccttacaatgatgcaacttacagtgaaacaaagttcgtct |
8707695 |
T |
|
| Q |
316 |
tgatagagacattttaaattcatc-aacaaaataaatttatttaccttcaatattcacattgtgcaaactttaagaccctaaattgatcgtcaaattaat |
414 |
Q |
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||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
8707694 |
tgaaagagacattctaaattcatcaaacaaaataaatttatttaccttcaatattcacattgtgcaaattataagaccctaaattgatcgccaaattaat |
8707595 |
T |
|
| Q |
415 |
ccctcaaacatttaaatgtcatcaca |
440 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
8707594 |
caaacaaacatttaaatgtcatcaca |
8707569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 378
Target Start/End: Complemental strand, 8692786 - 8692637
Alignment:
| Q |
232 |
aatttcatcatgatgatgagatacact-agatagaaatcacatggccttacaatgatgcaacttacaatgaaacaaagttcgtcttgatagagacatttt |
330 |
Q |
| |
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||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| || | |
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|
| T |
8692786 |
aatttcatcatgatgatcaaatacacacagatgaaaatcacatggccttacaatgatgcaacttacaatgaaagaaacttcatcttgatagaattgttct |
8692687 |
T |
|
| Q |
331 |
aaattcatc-aacaaaat-aaatttatttaccttcaatattcacattgtg |
378 |
Q |
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|| |||||| |||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
8692686 |
aatttcatctaacaaaataaaatttatttacctttaatgttcacattgtg |
8692637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14383098 - 14383144
Alignment:
| Q |
18 |
caagcaaaaaattaatcatatactcacagcagataatgatgtcacag |
64 |
Q |
| |
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|||| |||||||||| ||| |||||||| |||||||||||||||||| |
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|
| T |
14383098 |
caagaaaaaaattaaccatgtactcacaacagataatgatgtcacag |
14383144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 8699443 - 8699402
Alignment:
| Q |
23 |
aaaaaattaatcatatactcacagcagataatgatgtcacag |
64 |
Q |
| |
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|||||||||| ||| |||||||| |||||||||||||||||| |
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|
| T |
8699443 |
aaaaaattaaccatgtactcacaacagataatgatgtcacag |
8699402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 2846628 - 2846514
Alignment:
| Q |
83 |
tttaatgcaattcatgctgaaaaacactttctgacagttagaatactttataagattccaagaatcactactctggcaccaaggaaacttcttcatctcc |
182 |
Q |
| |
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||||||||||| ||||| ||||||| ||||||| ||||| | ||||||| | |||| |||||||||||||||| |||||| || |||||||| || |
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| T |
2846628 |
tttaatgcaatccatgcagaaaaactctttctggcagttgttacactttatcaaattcaaagaatcactactctgacaccaatgacacttcttcctccta |
2846529 |
T |
|
| Q |
183 |
cccttcttcaaaacc |
197 |
Q |
| |
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| ||||||||||||| |
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|
| T |
2846528 |
cacttcttcaaaacc |
2846514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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