View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14184_high_6 (Length: 464)

Name: NF14184_high_6
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14184_high_6
NF14184_high_6
[»] chr4 (9 HSPs)
chr4 (13-464)||(37897459-37897910)
chr4 (160-293)||(37895664-37895793)
chr4 (253-350)||(9568982-9569076)
chr4 (406-464)||(9569099-9569157)
chr4 (402-461)||(54295196-54295255)
chr4 (253-359)||(9602763-9602866)
chr4 (406-464)||(9593888-9593946)
chr4 (254-350)||(54295274-54295367)
chr4 (402-452)||(9574226-9574276)
[»] chr6 (21 HSPs)
chr6 (133-359)||(29144967-29145189)
chr6 (249-357)||(29299861-29299969)
chr6 (158-297)||(29012537-29012672)
chr6 (164-355)||(34281623-34281807)
chr6 (159-288)||(32745131-32745256)
chr6 (274-359)||(23218780-23218865)
chr6 (165-286)||(25319548-25319666)
chr6 (165-286)||(26149241-26149359)
chr6 (159-288)||(29123805-29123928)
chr6 (150-357)||(29131002-29131199)
chr6 (172-234)||(29152394-29152456)
chr6 (159-290)||(32960996-32961123)
chr6 (403-464)||(34258367-34258428)
chr6 (159-288)||(29136958-29137083)
chr6 (402-458)||(29145199-29145255)
chr6 (396-464)||(34281815-34281883)
chr6 (305-360)||(26090892-26090947)
chr6 (164-227)||(29149028-29149091)
chr6 (402-464)||(29131211-29131273)
chr6 (315-355)||(29152318-29152358)
chr6 (164-232)||(34278773-34278841)
[»] scaffold0134 (2 HSPs)
scaffold0134 (112-359)||(16410-16653)
scaffold0134 (402-458)||(16344-16400)
[»] chr7 (2 HSPs)
chr7 (147-293)||(42446008-42446150)
chr7 (315-359)||(42446187-42446231)
[»] scaffold0054 (2 HSPs)
scaffold0054 (162-358)||(40004-40187)
scaffold0054 (162-358)||(33653-33836)
[»] scaffold0613 (2 HSPs)
scaffold0613 (274-359)||(5-90)
scaffold0613 (402-458)||(100-156)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 37897459 - 37897910
Alignment:
Q  13 cttctctctctcatttctggtttcatgttgtaaatgactataaggtcattcgacaggtacggttttttacagaatcatcaggtgaataccctagtgacct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897459 cttctctctctcatttctggtttcatgttgtaaatgactataaggtcattcgacaggtacggttttttacagaatcatcaggtgaataccctagtgacct 37897558  T
Q  113 tgaagatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgtt 212  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897559 tgaggatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgtt 37897658  T
Q  213 gacatgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897659 gacatgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccct 37897758  T
Q  313 gatggaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgttattggttgtaacagtcataccctcag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  37897759 gatggaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgtcattggttgtaacaatcataccctcag 37897858  T
Q  413 acttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  37897859 acttggacgattgttttgatgttaaagctttgtggataaacttggcggtgtt 37897910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 37895664 - 37895793
Alignment:
Q  160 ccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtct 259  Q
    ||||||||||||| |||| |||||||||||| ||||||||  || |||||||||||||||| | ||||||||| | |   |||||    |||||||||||    
T  37895664 ccttatgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgccttattctttggaatgtaaggaggg----cacccaagtct 37895759  T
Q  260 acttggatggagtgtgtcattggttgtgtaaaga 293  Q
    |  |||||| ||||||||||||||||||| ||||    
T  37895760 atatggatgaagtgtgtcattggttgtgtgaaga 37895793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 350
Target Start/End: Original strand, 9568982 - 9569076
Alignment:
Q  253 caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatga 350  Q
    ||||||||| || |||| |||||||||||||||||| |||||||   ||||||||| |  |||||||||||| |||| ||||||||||||||||||||    
T  9568982 caagtctacatgaatggtgtgtgtcattggttgtgtgaagaaga---agaagatagtcaggatggaccatgtttggtatcattttacttgagcaatga 9569076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 406 - 464
Target Start/End: Original strand, 9569099 - 9569157
Alignment:
Q  406 ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  9569099 ccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgtt 9569157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 54295255 - 54295196
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggt 461  Q
    |||| ||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  54295255 catatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggt 54295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 9602866 - 9602763
Alignment:
Q  253 caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatg 352  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||||||||   ||| |  ||||||  |||  |||| |||||||||||||||||||| |    
T  9602866 caagtctacatggatggtgtgtgtcattggttgtgggaagaagatgaaga---tagtcaagatggaagatggttggtatcattttacttgagcaatgagg 9602770  T
Q  353 tgttctt 359  Q
    | |||||    
T  9602769 tattctt 9602763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 9593946 - 9593888
Alignment:
Q  406 ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    |||||| |||||||||||||||| ||| || | ||||||||||||||||||| ||||||    
T  9593946 ccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgtt 9593888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 54295367 - 54295274
Alignment:
Q  254 aagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctg-atggaccatgtctggtgtcattttacttgagcaatga 350  Q
    |||||||| ||||||| |||||||||||||||||| |||   |||||||  ||    ||| ||||||||||| |||| ||||||||||||||||||||    
T  54295367 aagtctacatggatggtgtgtgtcattggttgtgtgaagtgcatgaagataat----ctgcatggaccatgtttggtatcattttacttgagcaatga 54295274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 452
Target Start/End: Original strand, 9574226 - 9574276
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaa 452  Q
    |||||||||| |||| |||||| |||| |||||| ||||||||||||||||    
T  9574226 cataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 359
Target Start/End: Original strand, 29144967 - 29145189
Alignment:
Q  133 attggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga 232  Q
    |||||| |||||| || || ||||  || ||||||||| ||||||  ||||||||||||| ||||||  || ||||||||  |||||| |||||||   |    
T  29144967 attggtcgggagaaatatcattaggacctttatgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttcttcaca 29145066  T
Q  233 ctatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtc 332  Q
    |||| |||||||     |||||||| ||| ||| |||||||||||||||||||| | || ||||||||||||| |  ||||||||||||||| |||||||    
T  29145067 ctatactgaggg----aacccaagtatacctgggtggagtgtgtcattggttgtctgaaaaagatgaagaagaaaatcctgatggaccatgtttggtgtc 29145162  T
Q  333 attttacttgagcaatgatgtgttctt 359  Q
    |||||||||||| | ||| ||||||||    
T  29145163 attttacttgagtagtgaggtgttctt 29145189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 249 - 357
Target Start/End: Original strand, 29299861 - 29299969
Alignment:
Q  249 cacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaat 348  Q
    ||||||||||||| ||||||||||||| |||||||||||| || |||||||| || ||||||| | |||||||||| |||||||||||||||||||||||    
T  29299861 cacccaagtctacatggatggagtgtgccattggttgtgtgaaaaagatgaaaaacatagccccgctggaccatgtttggtgtcattttacttgagcaat 29299960  T
Q  349 gatgtgttc 357  Q
    || ||||||    
T  29299961 gaggtgttc 29299969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 29012537 - 29012672
Alignment:
Q  158 gcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagt 257  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||| || ||||||||||||||| ||||||||||| |  ||| ||    |||||||||    
T  29012537 gcccttatgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattctttggactgtattgacgg----cacccaagt 29012632  T
Q  258 ctacttggatggagtgtgtcattggttgtgtaaagaagat 297  Q
    |||| |||||||||||||||||||||||| | ||||||||    
T  29012633 ctacatggatggagtgtgtcattggttgtctgaagaagat 29012672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 164 - 355
Target Start/End: Original strand, 34281623 - 34281807
Alignment:
Q  164 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctactt 263  Q
    ||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||    ||||||| ||||| |    
T  34281623 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaagg----cacccaaatctacat 34281718  T
Q  264 ggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgt 355  Q
    ||| || |||||||||||||||||| || || ||    ||||||  ||   |||||||||| |||| |||||||||||||||||||| ||||    
T  34281719 ggacggtgtgtgtcattggttgtgtgaaaaacat---aaagataatcccattggaccatgtttggtatcattttacttgagcaatgaagtgt 34281807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 32745256 - 32745131
Alignment:
Q  159 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 258  Q
    |||||||||||| |||||| ||||||||||||||| |||||  || ||||||||||||||||| |||||||||||    | |||||    || ||| |||    
T  32745256 cccttatgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttctttggacaccacggaggg----caaccatgtc 32745161  T
Q  259 tacttggatggagtgtgtcattggttgtgt 288  Q
    ||| ||||||||||||||||||||||||||    
T  32745160 tacatggatggagtgtgtcattggttgtgt 32745131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 23218865 - 23218780
Alignment:
Q  274 tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 359  Q
    ||||||||||||||| || |||| || ||||||| ||| | |||||||||| ||||||||||||||||||||||||| ||||||||    
T  23218865 tgtcattggttgtgtgaaaaagacgaggaagataaccccgttggaccatgtttggtgtcattttacttgagcaatgaggtgttctt 23218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 25319666 - 25319548
Alignment:
Q  165 tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt 263  Q
    |||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| |||  | | |||||||    ||||| ||||||| |    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat 25319571  T
Q  264 ggatggagtgtgtcattggttgt 286  Q
    |||||||||||||||||||||||    
T  25319570 ggatggagtgtgtcattggttgt 25319548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 26149359 - 26149241
Alignment:
Q  165 tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt 263  Q
    |||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| |||  | | |||||||    ||||| ||||||| |    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat 26149264  T
Q  264 ggatggagtgtgtcattggttgt 286  Q
    |||||||||||||||||||||||    
T  26149263 ggatggagtgtgtcattggttgt 26149241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 29123805 - 29123928
Alignment:
Q  159 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 258  Q
    ||||||||||||  ||||| ||||||||||||||| |||||   | ||||||||||||||||| |||||||||||  | | |||||    || ||| |||    
T  29123805 cccttatgggag--atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttctttggacactacagaggg----caaccatgtc 29123898  T
Q  259 tacttggatggagtgtgtcattggttgtgt 288  Q
    ||| ||||||||||||||||||||||||||    
T  29123899 tacatggatggagtgtgtcattggttgtgt 29123928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 357
Target Start/End: Original strand, 29131002 - 29131199
Alignment:
Q  150 tctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcaccc 249  Q
    |||||||||||||   ||||| |||||| |  || ||||||||| ||||||||| |||||||||||||||| | ||| || |||| |  ||  || ||||    
T  29131002 tctttagcgccct---gggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgccttattcgttagactgtaatgcaggaaccc 29131098  T
Q  250 acccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatg 349  Q
    |    ||||||  ||||||| |||||||||||||||||| || || |||||||| ||   ||   |||||||||| |||| |||||||||||||||||||    
T  29131099 a----agtctatatggatggtgtgtgtcattggttgtgtgaaaaacatgaagaaaat---cccattggaccatgtttggtatcattttacttgagcaatg 29131191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 29152456 - 29152394
Alignment:
Q  172 tatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggact 234  Q
    |||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  29152456 tatatagcctaaggagtgactcgtggagagaacttgatgttgacatgccgtcttctgtggact 29152394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 290
Target Start/End: Complemental strand, 32961123 - 32960996
Alignment:
Q  159 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 258  Q
    |||||||||||| |||||| | |||||||||||||||||||  || ||||||||||||||||  |||||||  | |   | ||||||||||| |    ||    
T  32961123 cccttatgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgccaccttctttaaaatggtccgagggcacccatc----tc 32961028  T
Q  259 tacttggatggagtgtgtcattggttgtgtaa 290  Q
    ||| ||||||| ||||||||||||||||||||    
T  32961027 tacatggatggtgtgtgtcattggttgtgtaa 32960996  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 464
Target Start/End: Complemental strand, 34258428 - 34258367
Alignment:
Q  403 ataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    ||||||||| || | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  34258428 ataccctcatacgttgatgattgttttgatgttaaagcaaagtggataaacttggcggtgtt 34258367  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 288
Target Start/End: Original strand, 29136958 - 29137083
Alignment:
Q  159 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 258  Q
    |||||||||||| |||||  ||||||||||||||| | |||  || |||| |||||||||||| ||||||||||   | | || ||    |||||| |||    
T  29136958 cccttatgggagatatatgacctaagaagtaactcctcgaggaaacttgaggttgacatgccgccttctttggatattacggaagg----cacccatgtc 29137053  T
Q  259 tacttggatggagtgtgtcattggttgtgt 288  Q
    ||| ||||||||||||||||||||||||||    
T  29137054 tacatggatggagtgtgtcattggttgtgt 29137083  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 29145199 - 29145255
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc 458  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| ||||    
T  29145199 cataccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggc 29145255  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 464
Target Start/End: Original strand, 34281815 - 34281883
Alignment:
Q  396 aacagtcataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||||  ||||| |||||||| ||||||    
T  34281815 aacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtggaaaaacttggtggtgtt 34281883  T

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Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 26090947 - 26090892
Alignment:
Q  305 atagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttcttt 360  Q
    ||||||||| | ||||||||||||| |||||| ||||||||||||| |||||||||    
T  26090947 atagccctggtagaccatgtctggtatcatttaacttgagcaatgaggtgttcttt 26090892  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 29149091 - 29149028
Alignment:
Q  164 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttct 227  Q
    ||||||| | |||| ||||| ||||||||| ||||||||| || ||||||||||||||||||||    
T  29149091 atgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttct 29149028  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 29131211 - 29131273
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 464  Q
    ||||||||||||| | |||||||||||||||||||||| |   |||||||||||||| |||||    
T  29131211 cataccctcagacgtagatgattgttttgatgttaaagaaaattggataaacttggcagtgtt 29131273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 29152358 - 29152318
Alignment:
Q  315 tggaccatgtctggtgtcattttacttgagcaatgatgtgt 355  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  29152358 tggaccatgtttggtatcattttacttgagcaatgaagtgt 29152318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 34278841 - 34278773
Alignment:
Q  164 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga 232  Q
    ||||||| |||||| ||| | |||||| |||||||||||| |||||| || |||||||| |||| ||||    
T  34278841 atgggagatatatagcctgataagtaattcgtggagagaacttgatgctgtcatgccgtattctatgga 34278773  T

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Target: scaffold0134 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 359
Target Start/End: Complemental strand, 16653 - 16410
Alignment:
Q  112 ttgaagatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgt 211  Q
    ||||||| || |||| |||| ||| ||||||| | || |||||||  || ||||||||| |||||| ||||| |||||||||||||||  || |||| ||    
T  16653 ttgaagagattatatattcaaattcgttgggaaaaatatctttagaacctttatgggagatatatagcctaacaagtaactcgtggaggaaacttgacgt 16554  T
Q  212 tgacatgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccc 311  Q
    ||||||||| | |||||   | | |  ||||||||||||    ||||||| | |||| | | ||||||||||||||| || |||| || ||||||| |||    
T  16553 tgacatgccattttcttcaaaatgtaatgagggcaccca----agtctacatagatgaaatctgtcattggttgtgtgaaaaagacgaggaagataaccc 16458  T
Q  312 tgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 359  Q
     | |||| ||||| ||||||||||||||||||||||||| ||||||||    
T  16457 cgctggagcatgtttggtgtcattttacttgagcaatgaggtgttctt 16410  T

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Target: scaffold0134; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 16400 - 16344
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc 458  Q
    |||||||||| |||| |||||||||||||||||| ||||||  ||||||||||||||    
T  16400 cataccctcaaacttagatgattgttttgatgttgaagcatcatggataaacttggc 16344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 293
Target Start/End: Original strand, 42446008 - 42446150
Alignment:
Q  147 atctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggca 246  Q
    ||||||||||   ||||||||||| ||||||  |||||||||||| |||||||  || |||||||||||||||| | ||||||||| | |  ||||||      
T  42446008 atctctttagactccttatgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgccttattctttggaatgtattgaggg-- 42446105  T
Q  247 cccacccaagtctacttggatggagtgtgtcattggttgtgtaaaga 293  Q
      ||||||||||||| |||||||||||||||||||||||||| ||||    
T  42446106 --cacccaagtctacatggatggagtgtgtcattggttgtgtgaaga 42446150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 42446187 - 42446231
Alignment:
Q  315 tggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 359  Q
    |||||||||| |||| |||||| |||||||||||||||| |||||    
T  42446187 tggaccatgtttggtatcatttgacttgagcaatgatgtattctt 42446231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 358
Target Start/End: Complemental strand, 40187 - 40004
Alignment:
Q  162 ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac 261  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||| |||||||   ||| |   |||||     ||||||||||||    
T  40187 ttatgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac 40092  T
Q  262 ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct 358  Q
     |||||||||||||||||||||||||         ||||||  ||| ||||| |||||||||| | || |||||||||||||| ||||| |||||||    
T  40091 atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct 40004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 162 - 358
Target Start/End: Complemental strand, 33836 - 33653
Alignment:
Q  162 ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac 261  Q
    ||||||||| |||||| |||||||||||||||||||||  || ||||| |||||||||| |||||||   ||| |   |||||     ||||||||||||    
T  33836 ttatgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac 33741  T
Q  262 ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct 358  Q
     |||||||||||||||||||||||||         ||||||  ||| ||||| |||||||||| | || |||||||||||||| ||||| |||||||    
T  33740 atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct 33653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 274 - 359
Target Start/End: Original strand, 5 - 90
Alignment:
Q  274 tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 359  Q
    ||||||||||||||| || |||| || ||||||| ||| | || ||||||| ||||||||||||||||||||||||| ||||||||    
T  5 tgtcattggttgtgtgaaaaagacgaggaagataaccccgctgaaccatgtttggtgtcattttacttgagcaatgaggtgttctt 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 100 - 156
Alignment:
Q  402 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc 458  Q
    |||||||||| |||| |||||||||||||||||| ||||||  ||||||||||||||    
T  100 cataccctcaaacttagatgattgttttgatgttgaagcatcctggataaacttggc 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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