View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_high_9 (Length: 385)
Name: NF14184_high_9
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 371
Target Start/End: Original strand, 13446026 - 13446373
Alignment:
| Q |
26 |
acgctattatattttggatgcaaacaaatttttgttaaaaataacatgattcaccataagaccaaaacatagatttttatcataatgcactcaatgctta |
125 |
Q |
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| T |
13446026 |
acgctattatatttaggatgcaaacaaatttttgttaaaaataacatgattcaccataagtacaaaacatagatttttatcataatgcactcgatgctta |
13446125 |
T |
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| Q |
126 |
nnnnnnnn--atgctctagaaacttacatcacacaaatacaacagagggaaatctaaaataccattggcaagtgcgtgatacacttaaactacacgtttt |
223 |
Q |
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| T |
13446126 |
ttttttttttatgcactagaaaattacatcacacaaatacaacagagggaaatctaaaataccattggcaagtgcgtgatacacttaaactatacgtttt |
13446225 |
T |
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| Q |
224 |
tattattatttgtttatccatgaatcattctgagaatatatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgat |
323 |
Q |
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| T |
13446226 |
tattattatttgtttatctatgaatcattctgagaatatatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgat |
13446325 |
T |
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| Q |
324 |
atttgacatctcctttaacaagacgctccattgcggtgttgacataat |
371 |
Q |
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| T |
13446326 |
atttgacatctcctttaacaagacgctccattgcggtgttgacataat |
13446373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 244 - 371
Target Start/End: Original strand, 13425541 - 13425667
Alignment:
| Q |
244 |
tgaatcattctgagaatatatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaaca |
343 |
Q |
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| T |
13425541 |
tgaatcattctgtgag-atatatcctgcaatgtttaagggcttggttttagtgtatttccaatatcaataacgaatcgatatttcacatctgctttctcg |
13425639 |
T |
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| Q |
344 |
agacgctccattgcggtgttgacataat |
371 |
Q |
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| T |
13425640 |
agacgctccattgctgtgttgacataat |
13425667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 13418683 - 13418793
Alignment:
| Q |
261 |
atatatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggt |
360 |
Q |
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| T |
13418683 |
atatatcctgcaatgtttaagggcttggtttcagcgtatttccaatatcaatcacgaatcgatatttaacatctgctttatcgagacgctccattgctgt |
13418782 |
T |
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| Q |
361 |
gttgacataat |
371 |
Q |
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| T |
13418783 |
gttgacataat |
13418793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 371
Target Start/End: Original strand, 13412308 - 13412415
Alignment:
| Q |
264 |
tatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggtgtt |
363 |
Q |
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| T |
13412308 |
tatcctgcaaagttcaagagcttggtttcagtgtgtttccaatatcaatcacaaatcgatatttcacgtctcccttagcaagacgctgcattgctgtgtt |
13412407 |
T |
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| Q |
364 |
gacataat |
371 |
Q |
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|||||||| |
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| T |
13412408 |
gacataat |
13412415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 13453082 - 13453190
Alignment:
| Q |
263 |
atatcctgcaatgtttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggtgt |
362 |
Q |
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||||||||||| || ||| ||||| ||||| || ||||||||||||||||| ||||||||||| |||||| |||||| ||| |||||||| || |||| |
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| T |
13453082 |
atatcctgcaaaattcaagagcttgattttaatgtgtttccaatatcaatcacaaatcgatatttcacatctgctttaagaaggcgctccatcgctgtgt |
13453181 |
T |
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| Q |
363 |
tgacataat |
371 |
Q |
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| T |
13453182 |
tgacataat |
13453190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 371
Target Start/End: Original strand, 47600457 - 47600552
Alignment:
| Q |
276 |
tttaagggcttggttttagtgaatttccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggtgttgacataat |
371 |
Q |
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| T |
47600457 |
tttaagagcttggtttgagagtgtttccaatgtcaatcacaaatcgatatttgacatctgctttgaggagtcgctccattgcagtgttaacataat |
47600552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 28431686 - 28431617
Alignment:
| Q |
302 |
ccaatatcaatcacgaatcgatatttgacatctcctttaacaagacgctccattgcggtgttgacataat |
371 |
Q |
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| T |
28431686 |
ccaatatcaataacaaatcgatatttgacatctgctttaagcagacgctccaatgcagtgttcacataat |
28431617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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