View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_12 (Length: 307)
Name: NF14184_low_12
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 23 - 292
Target Start/End: Complemental strand, 27865204 - 27864938
Alignment:
| Q |
23 |
tttgatgatttggaacgtttcaaatctgcaactatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttgagtata |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27865204 |
tttgatgatttggaacgtttcaaatctgcaactatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttgagtata |
27865105 |
T |
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| Q |
123 |
tatatatgattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcatttcataaagcca |
222 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27865104 |
tat----gattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcatttcataaagcca |
27865009 |
T |
|
| Q |
223 |
cattaattgtcacttaactttggcttattatcttttttgaaatttaatttgaa-tttgggtgtaatagatg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
27865008 |
cattaattgtcacttaactttggcttattatcttttttgaaatgtaatttgaattttgggtgtaatagatg |
27864938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 28027825 - 28027551
Alignment:
| Q |
18 |
tattttttgatgatttggaacgtttcaaatctgcaa-ctatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttg |
116 |
Q |
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|||||||||||||||||||||| ||| ||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
28027825 |
tattttttgatgatttggaacgcttctaatatgcatgctatcttcaagggtagctttcttcgaattgcatttatataattttcaacgaaagtcttctttg |
28027726 |
T |
|
| Q |
117 |
agtatatatatatgattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcat-ttcat |
215 |
Q |
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| T |
28027725 |
agtatatat----gattcgttg-tgatacaacctattttgaattattgtggatgtagtaaaaatgacttggtttcgactacaagacttgagcatattcat |
28027631 |
T |
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| Q |
216 |
aaagccacattaattgt--cacttaactttggcttattatcttttttgaaatttaatttgaa-tttgggtgtaatagatg |
292 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||| |
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| T |
28027630 |
aaagccaaattaattgtgccacttaactttggcttattatcttttttgaaatgtaattagaattttcggtgtaatagatg |
28027551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 27888922 - 27888650
Alignment:
| Q |
18 |
tattttttgatgatttggaacgtttcaaatctgcaa-ctatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttg |
116 |
Q |
| |
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|||||||||||||||||||||| ||| ||| |||| ||||||||||| |||||||||||||||| ||||||| ||||||||| || ||||||||||| |
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| T |
27888922 |
tattttttgatgatttggaacgcttctaatatgcatgctatcttcaagggtagctttcttcgaattgcatttataaaattttcaacgaaagtcttctttg |
27888823 |
T |
|
| Q |
117 |
agtatatatatatgattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcat-ttcat |
215 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
27888822 |
agt-------tatgattcgtttgtgatacaacctattttgaattattgtggatgtagtaaaaatgacttggtttcgactacaagacttgagcatattcat |
27888730 |
T |
|
| Q |
216 |
aaagccacattaattgt--cacttaactttggcttattatcttttttgaaatttaatttgaa-tttgggtgtaatagatg |
292 |
Q |
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| T |
27888729 |
aaagccaaattaattgtgccacttaactttggcttattatcttttttgaaatgtaattagaattttcggtgtaatagatg |
27888650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 27947580 - 27947308
Alignment:
| Q |
18 |
tattttttgatgatttggaacgtttcaaatctgcaa-ctatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttg |
116 |
Q |
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|
|||||||||||||||||||||| ||| ||| |||| ||||||||||| |||||||||||||||| ||||||| ||||||||| || ||||||||||| |
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| T |
27947580 |
tattttttgatgatttggaacgcttctaatatgcatgctatcttcaagggtagctttcttcgaattgcatttataaaattttcaacgaaagtcttctttg |
27947481 |
T |
|
| Q |
117 |
agtatatatatatgattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcat-ttcat |
215 |
Q |
| |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
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| T |
27947480 |
agt-------tatgattcgtttgtgatacaacctattttgaattattgtggatgtagtaaaaatgacttggtttcgactacaagacttgagcatattcat |
27947388 |
T |
|
| Q |
216 |
aaagccacattaattgt--cacttaactttggcttattatcttttttgaaatttaatttgaa-tttgggtgtaatagatg |
292 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||| |
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| T |
27947387 |
aaagccaaattaattgtgccacttaactttggcttattatcttttttgaaatgtaattagaattttcggtgtaatagatg |
27947308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 27970556 - 27970418
Alignment:
| Q |
18 |
tattttttgatgatttggaacgtttcaaatctgcaa-ctatcttcaagattagctttcttcgaattatatttatataattttcaatgacagtcttctttg |
116 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||| ||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||| |
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| T |
27970556 |
tattttttgatgatttggaacgcttctaatatgcatgctatcttcaagggtagctttcttcgaattgcatttatataattttcaacgaaagtcttctttg |
27970457 |
T |
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| Q |
117 |
agtatatatatatgattcgtttatgatacaacctattttgaatt |
160 |
Q |
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||||| |||||||||| || ||||||||||||||||||||| |
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| T |
27970456 |
agtat----atatgattcg-ttgtgatacaacctattttgaatt |
27970418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 47785788 - 47785619
Alignment:
| Q |
123 |
tatatatgattcgtttatgatacaacctattttgaattattgtggatgtagtacaaatgacttggtttcgactacaacacttgagcatttcataaagcca |
222 |
Q |
| |
|
|||||||| || |||| || |||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||| |
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| T |
47785788 |
tatatatgcttggtttgtgttacaacatattttgaataattgtgtttgtagtacaaatgactttgtttcgactacaacacttgagtatttcacaaatcca |
47785689 |
T |
|
| Q |
223 |
cattaattgtcacttaactttggcttattatcttttttgaaatttaatttgaat-ttgggtgtaatagat |
291 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | |||| |||||||||| ||||||||||||||| |
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|
| T |
47785688 |
cattaattgtcacttgactttggcttattaatttactagaaacgtaatttgaatattgggtgtaatagat |
47785619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 39676315 - 39676249
Alignment:
| Q |
171 |
tagtacaaatgacttggtttcgactacaacacttgagcatttcataaagccacattaattgtcactt |
237 |
Q |
| |
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||||| || ||||||||||| |||||| ||||||||||||| || |||| ||||||||||||||||| |
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| T |
39676315 |
tagtaaaattgacttggttttgactactacacttgagcattccacaaagtcacattaattgtcactt |
39676249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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