View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_13 (Length: 299)
Name: NF14184_low_13
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 4514590 - 4514315
Alignment:
| Q |
18 |
attataaccttatcatcaattgcaaatcaatcaacaacaaaacgtgattattgtagtaggttaattaattaatcaatttggtgatcctacaactaaacaa |
117 |
Q |
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| T |
4514590 |
attataaccttatcatcaattgcaaatcaatcaacaacaaaacgtgattattgtagtaggttaattaattaatcaatttggtgatcctacaactaaacaa |
4514491 |
T |
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| Q |
118 |
ggcccctcaatcagacaaattcacttcaccacagtagtagttagctttggcgccctaataaatgtgttggctactattccaccaattttcaaaggaaaag |
217 |
Q |
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| T |
4514490 |
ggcccct------gacaaattcacttcaccacagttgtagttagctttggcgccctaataaatgtgttggctactattccaccaattttcaaaggaaaag |
4514397 |
T |
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| Q |
218 |
gacaacttgatcaattagacacactccccaacagtatacttaatgattgattatctaatagagaaatgatatttgtacaacc |
299 |
Q |
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| T |
4514396 |
gacatcttgatcaattagacacactccccaacagtatacttaatgattgattatctaatagagaaataatatttatacaacc |
4514315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 6093483 - 6093229
Alignment:
| Q |
23 |
aaccttatcatcaattgcaaatcaatcaacaacaaaacgtgattattgtagtaggttaattaattaatcaatttggtgatcctacaactaaacaaggccc |
122 |
Q |
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| T |
6093483 |
aaccttatcatcaattgcaaatcaatcaacaacaaaacgtgattatggtagtaggttaattaattaatcaatttggtgatcctacaactaaacaaggccc |
6093384 |
T |
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| Q |
123 |
ctcaatcagacaaattcacttcaccacagtagtagttagctttggcgccctaataaatgtgttggctactattccaccaattttcaaaggaaaaggacaa |
222 |
Q |
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| T |
6093383 |
ctcaatcagacaaattcacttgaccacagttgttgttaactttggagccctaataaatgttttggatactattccaccaattttcaaaggaaaaggacat |
6093284 |
T |
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| Q |
223 |
cttgatcaattagacacactccccaacagtatacttaatgattgattatctaata |
277 |
Q |
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| T |
6093283 |
tttgatcaattagacacactccccaacagtatacttaatgattgataatttaata |
6093229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 10994236 - 10994202
Alignment:
| Q |
265 |
tgattatctaatagagaaatgatatttgtacaacc |
299 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
10994236 |
tgattaactaatagagaaatgatatttgtacaacc |
10994202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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