View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_15 (Length: 243)
Name: NF14184_low_15
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40280255 - 40280500
Alignment:
| Q |
1 |
cgttgacgtcgtcccagcaccttattggtaggaggagaaagatctt------gttcttgatgatagtggaatggtaatttgggaattagggcaagattat |
94 |
Q |
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| T |
40280255 |
cgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttgttcttgatgatagtggaatggtaatttgggaattagggcaagattat |
40280354 |
T |
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| Q |
95 |
tagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggggggtgttaatgg |
194 |
Q |
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| T |
40280355 |
tagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggagggtgttaatgg |
40280454 |
T |
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| Q |
195 |
cgtgtattcaaatggtggaggcctagggggtgatgatgatgtccat |
240 |
Q |
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| T |
40280455 |
cgtgtattcaaatggtggaggcctagggggtgatgatggtgtccat |
40280500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40458095 - 40457858
Alignment:
| Q |
1 |
cgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttg------atgatagtggaatggtaatttgggaattagggcaagattat |
94 |
Q |
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| T |
40458095 |
cgttgacgtcgtcccagcaccttattggtaggaggagaaagatcttgttcttgttcttgatgatagtggaatggtaatttgggaattagggcaagattat |
40457996 |
T |
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| Q |
95 |
tagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggggggtgttaatgg |
194 |
Q |
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| T |
40457995 |
tagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaatagggcgtgtggagggtgttaatgg |
40457896 |
T |
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| Q |
195 |
cgtgtattcaaatggtggaggcctagggggtgatgatg |
232 |
Q |
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| T |
40457895 |
cgtgtattcaaatggtggaggtctagggggtgatgatg |
40457858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 40285310 - 40285452
Alignment:
| Q |
71 |
atttgggaattagggcaagattattagggttagagtcaaaattaggaggacgaggaagagaagtgatgagttcggaatagaagaatgtttgaggatcaat |
170 |
Q |
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| T |
40285310 |
atttggggattagggcaagattatcaaggtcagagtcaaaattaggaggatgaggaagattggttatgagttcggaatagaagaatgtctgtggatcaat |
40285409 |
T |
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| Q |
171 |
aggg---cgtgtggggggtgttaatggcgtgtattcaaatggt |
210 |
Q |
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| T |
40285410 |
agggagacgcgtgcggggtgttgatggtgtgtattcagatggt |
40285452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 40280807 - 40280856
Alignment:
| Q |
186 |
tgttaatggcgtgtattcaaatggtggaggcctagggggtgatgatgatg |
235 |
Q |
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| T |
40280807 |
tgttaatggtgtgtattcagatggtggaggcctaggtggcgatgatgatg |
40280856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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