View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_17 (Length: 241)
Name: NF14184_low_17
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40280217 - 40279995
Alignment:
| Q |
1 |
ctaactaagagcatgacagttccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactca |
100 |
Q |
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| T |
40280217 |
ctaactaagagcatggcagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactca |
40280118 |
T |
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| Q |
101 |
agactatctctggaactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcataga |
200 |
Q |
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| T |
40280117 |
atactatctctggaactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcataga |
40280018 |
T |
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| Q |
201 |
ggaaagaaggaacgagatgtgtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40280017 |
ggaaagaaggaacgagatgtgtg |
40279995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40458133 - 40458355
Alignment:
| Q |
1 |
ctaactaagagcatgacagttccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactca |
100 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458133 |
ctaactaagagcatggcagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactca |
40458232 |
T |
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| Q |
101 |
agactatctctggaactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcataga |
200 |
Q |
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| T |
40458233 |
atactatctctggaactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcataga |
40458332 |
T |
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| Q |
201 |
ggaaagaaggaacgagatgtgtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
40458333 |
ggaaagaaggaacgagatgtgtg |
40458355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 40285165 - 40284956
Alignment:
| Q |
14 |
tgacagttccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctgg |
113 |
Q |
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||||||| ||||| || |||| |||||| ||||| ||||| || | |||| ||||||| |||||| ||||||| ||| |||||||| ||||||||||||| |
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| T |
40285165 |
tgacagtaccaccaccgttcctatgggcaacttcaaaacgcgctaccttgtacacactggaccacttgttatctgtattgaaactccagactatctctgg |
40285066 |
T |
|
| Q |
114 |
aactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaagaaggaac |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40285065 |
aactcttgaatgcaaattctgtaagtttcaacaagacattcagtttgatttggttgagaatttcaggaaagtgacaaggttcatagaggaaagaaggaat |
40284966 |
T |
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| Q |
214 |
gagatgtgtg |
223 |
Q |
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|||||||||| |
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| T |
40284965 |
gagatgtgtg |
40284956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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