View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_3 (Length: 475)
Name: NF14184_low_3
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Complemental strand, 55824472 - 55824023
Alignment:
| Q |
10 |
cttaatatgattcaagtaggagagcatcataccagtaatatctaaaaactttaaaaaggtggtaatatgcggcccatgcttatttgatgcagaaggctac |
109 |
Q |
| |
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|||||| ||||||||| |||||| ||| ||||| |||||||||| ||||| | | |||||||| || |||||||||| |||||||||||||||||| |
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| T |
55824472 |
cttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgcttctttgatgcagaaggctac |
55824373 |
T |
|
| Q |
110 |
aaccatagtacgggtcaaaagaagagaacaagaaggtcaaataataatttaaatatgaagactctaaatactaatactaaccaatattacacaatcgcga |
209 |
Q |
| |
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||||||| | |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
55824372 |
aaccatatcatgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaatactaatactaaccaatatgacacgatcgcga |
55824273 |
T |
|
| Q |
210 |
tattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattgagt-aatagatagtgctcca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55824272 |
tattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattgagtaaatagatagtgctcca |
55824173 |
T |
|
| Q |
309 |
acaaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgctttgtcaaatgtgctaagcccaacaccaattgcaaagacaggaagaccc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824172 |
acaaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgctttgtcaaatgtgctaagcccaacaccaattgcaaagacaggaagaccc |
55824073 |
T |
|
| Q |
409 |
tgaaaaggaaagaaaaatgaaggatataaaccaattaactactaagtcat |
458 |
Q |
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| T |
55824072 |
tgaaaaggaaagaaaaatgaaggatataaaccaattaactactaagtcat |
55824023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Original strand, 56152980 - 56153427
Alignment:
| Q |
10 |
cttaatatgattcaagtaggagagcatcataccagtaatatctaaaaactttaaaaaggtggtaatatgcggcccatgcttatttgatgcagaaggctac |
109 |
Q |
| |
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|||||| ||||||||| |||||| ||| ||||| |||||||||| ||||| | | |||||||| || |||||||||| |||||||| ||||||||| |
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| T |
56152980 |
cttaatgtgattcaaggccgagagcttcaggccagtcatatctaaaacctttacacaattggtaataggccgcccatgcttctttgatgcggaaggctac |
56153079 |
T |
|
| Q |
110 |
aaccatagtacgggtcaaaagaagagaacaagaaggtcaaataataatttaaatatgaagactctaaatactaatactaaccaatattacacaatcgcga |
209 |
Q |
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| T |
56153080 |
agccatatcacgggtcagaagaagagaacaaaaaggtcaaataataggttaaatatgaagactctaaataataatactcaccaagattacacgatcgcga |
56153179 |
T |
|
| Q |
210 |
tattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataaagcacagaagattgagtaatagatagtgctccaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
56153180 |
tattcattcatttgaatgtgagactgcacataataatggacctgcaatcatacaaataggaaataa-gcacagaagattgagtaatagatagtgctccaa |
56153278 |
T |
|
| Q |
310 |
caaaaagcaacatccctttttgtttttgaaatgattaaacttactgatgctttgtcaaatgtgctaagcccaacaccaattgcaaagacaggaagaccct |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56153279 |
caaaaagcaacatccctttttgtttttgaaatgattaaacttaccgatgctttgtcaaatgtgctaagcccaacaccaattgcaaagacaggaagaccct |
56153378 |
T |
|
| Q |
410 |
gaaaaggaaagaaaaatgaaggatataaaccaattaactactaagtcat |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56153379 |
aaaaaggaaagaaaaatgaaggatataaaccaattaactactaagtcat |
56153427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 9888421 - 9888488
Alignment:
| Q |
189 |
accaatattacacaatcgcgatattcattcatttgaatgtgagactgcacataataatggacctgcaa |
256 |
Q |
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| T |
9888421 |
accaagattacacgatcacgatattcattaatttgaatgtgagactgaacataataatggacctgcaa |
9888488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 346 - 411
Target Start/End: Original strand, 9888607 - 9888672
Alignment:
| Q |
346 |
aaacttactgatgctttgtcaaatgtgctaagcccaacaccaattgcaaagacaggaagaccctga |
411 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
9888607 |
aaacttacagatgctttgtcgaatgtgctaagcccaacaccgattgcaaagacaggcaggccctga |
9888672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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