View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_4 (Length: 473)
Name: NF14184_low_4
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 6884811 - 6885086
Alignment:
| Q |
11 |
cacagaaaccacaattgaaatgaacacacacttgtgctcacaaactatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaag |
110 |
Q |
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| T |
6884811 |
cacagaaaccacaattgaaatgaacacacacttgtgctcacaaattatcccatcattatacttttgatgttgcaaaggatatggggattcttgaggcaag |
6884910 |
T |
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| Q |
111 |
tttggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtaacaacacatgagaacaaaaattattaacca |
210 |
Q |
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| T |
6884911 |
tttggcatgagcatctccagtagtcattacttgaggtattgacatgccaccagatataacaatttctgtatcaacacatgagaacaaaaattattaacga |
6885010 |
T |
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| Q |
211 |
aaatcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
286 |
Q |
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| T |
6885011 |
aaatcgaaaaactttggtgggaataacaatacaaaattattaaccagatataacaattttaatacaaaagttttgt |
6885086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 344 - 456
Target Start/End: Original strand, 6885097 - 6885209
Alignment:
| Q |
344 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagattaggcctcaaaatatcatttgggctaacgagaaaaatatctccaaggta |
443 |
Q |
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| T |
6885097 |
ttatgtggcaaggaactttatacatacctattccttcacgaacagagagattaggcctcaaaatatcatttgggctaacgagaaaaatatctccaaggta |
6885196 |
T |
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| Q |
444 |
caagtgattggtg |
456 |
Q |
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| T |
6885197 |
caggtgattggtg |
6885209 |
T |
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