View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14184_low_7 (Length: 426)
Name: NF14184_low_7
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_7 |
 | |
|
| [»] scaffold0268 (2 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 409
Target Start/End: Original strand, 13923516 - 13923912
Alignment:
| Q |
13 |
caaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaacaacttcccggtggattgtaatgatgggagatatatgtattgccgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13923516 |
caaaggcaaggacgtattcttgacctaatggtgtagcgccttaacattgataaccaacctcccggtggattgtaatgatgggagatatatgtattgccgg |
13923615 |
T |
|
| Q |
113 |
ctattgcttcttggctctatttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttcaatttgaaa |
212 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13923616 |
ctattgcttcttggatctgtttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactgttttgttggtttcaatttgaaa |
13923715 |
T |
|
| Q |
213 |
atgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaatgcttttgt |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13923716 |
atgctcttgcgagagttgtaataataatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaatgcttttgt |
13923815 |
T |
|
| Q |
313 |
aatattatttacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgttgtcgta |
409 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13923816 |
aatattaattacaatgttacctatctatctctgtgtgtaggttcgtaatttaattggtaatgtatgagattacatataaaggtttgccgttgtcgta |
13923912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 15745586 - 15745183
Alignment:
| Q |
5 |
aggagaagcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaacaacttcccggtggattgtaatgatgggagatatatgt |
104 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
15745586 |
aggagcagcaaaggcagggacgtattcttgacctaatgatgcagcgccttaacattgataaccaacctccta-tggattgtaatgatgggagatatatgt |
15745488 |
T |
|
| Q |
105 |
attgccggctattgcttcttggctctatttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttca |
204 |
Q |
| |
|
||| |||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
15745487 |
atttccggctattgcttcttggatctgtttgctttggcaacactcgtgcctttcttttatttaatttaacatctactctaaaactgttttgttggtttca |
15745388 |
T |
|
| Q |
205 |
atttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15745387 |
atttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaat |
15745288 |
T |
|
| Q |
305 |
gcttttgtaatattatttacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgttg |
404 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
15745287 |
gcttttgtaatattaattacgatgttacctatctatctctgtgtgtaggttcgtaatttaattggtaatgtatgggattacatataaaggtttgtcgttg |
15745188 |
T |
|
| Q |
405 |
tcgta |
409 |
Q |
| |
|
||||| |
|
|
| T |
15745187 |
tcgta |
15745183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 5 - 406
Target Start/End: Original strand, 2195420 - 2195813
Alignment:
| Q |
5 |
aggagaagcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaac-aacttcccggtggattgtaatgatgggagatatatg |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2195420 |
aggagcagcaaaggcaaggacgtattcttgacctaatggtgcagcgccttaacattgattaaccaacctcccggtggattgtaatgatgggagatata-- |
2195517 |
T |
|
| Q |
104 |
tattgccggctattgcttcttggctctatttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttc |
203 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2195518 |
-------ggctaatgcttcttggatctgtttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactgttttgttggtttc |
2195610 |
T |
|
| Q |
204 |
aatttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2195611 |
aatttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaa |
2195710 |
T |
|
| Q |
304 |
tgcttttgtaatattatttacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgtt |
403 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2195711 |
tgcttttgtaatattaattacaatgttacctatctatctatgtgtgtaggttcgtaatttaattggtaatgtatgagattacatataaaggtttgccgtt |
2195810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 24018264 - 24017878
Alignment:
| Q |
11 |
agcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaac-aacttcccggtggattgtaatgatgggagatatatgtattgc |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
24018264 |
agcaaaggcaaggatgtattcttgacctaatgatgcagcgccttaacattgattaaccaacctcccggtggattgtaatgatgggagatata-------- |
24018173 |
T |
|
| Q |
110 |
cggctattgcttcttggctctatttgctttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttcaatttg |
209 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24018172 |
-ggctattgcttcttggatctgtttggtttggcaacaatcgtgtctttcttttatttaatttaacgtctactctaaaactgttttgttggtttcaatttg |
24018074 |
T |
|
| Q |
210 |
aaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaatgcttt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
24018073 |
aaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctatataa-tttggtttaagtttcactgtgaacaatgcttt |
24017975 |
T |
|
| Q |
310 |
tgtaatattatttacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgttgtc |
406 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
24017974 |
tgtaatattaattacaatgttacctatctatctatgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaagctttgccgttgtc |
24017878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 5 - 409
Target Start/End: Original strand, 22286566 - 22286963
Alignment:
| Q |
5 |
aggagaagcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaac-aacttcccggtggattgtaatgatgggagatatatg |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||||||||||| | |
|
|
| T |
22286566 |
aggagcagcaaaggcaaggacgtattcttgacctaatgatgcagcgccttaacattgattaaccaacctcccagtggattgtaatgatgggagatatagg |
22286665 |
T |
|
| Q |
104 |
tattgccggctattgcttcttggctctatttgctttggcaacaatcgtgtctttcttttatttaattt-aacgtctactctaaaactattttgttggttt |
202 |
Q |
| |
|
| ||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
22286666 |
t---------tattgcttcttagatctgtttggtttggcaacaatcgtgtctttcttttatttaattttaacgtctactctaaaactgttttgttggttt |
22286756 |
T |
|
| Q |
203 |
caatttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaaca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22286757 |
caatttgaaaatgctcttgcgagagttgtaatagtaatgcacttttaacaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaaca |
22286856 |
T |
|
| Q |
303 |
atgcttttgtaatattatttacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgt |
402 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22286857 |
atgcttttgtaatattaattacaatgttacctatctatctctgtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttgccgt |
22286956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 150 - 409
Target Start/End: Original strand, 17735 - 17994
Alignment:
| Q |
150 |
gtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttcaatttgaaaatgctcttgcgagagttgtaatagtaatgcactttta |
249 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17735 |
gtgtcattcttttatttaatttaacgtctactctaaaactgttttgttggtttcaatttgaaaatgctcttgcgagagttgtaatagtaatgcactttta |
17834 |
T |
|
| Q |
250 |
acaaagtactcttttatttctgtataagtttgattcaagtttcactgtgaacaatgcttttgtaatattatttacaatgttacctatctatctctgtgtg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17835 |
acaaagtactcttttatttctgtataagtttgattcaagtttcactgtaaacaatgcttttgtaatattaattacaatgttacctatctatctctgtgtg |
17934 |
T |
|
| Q |
350 |
tgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgttgtcgta |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
17935 |
tgggtttgtaatttaattggtaatgtatgacattacatataaaggtttgccgttgtcgta |
17994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 17662 - 17737
Alignment:
| Q |
5 |
aggagaagcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaa-caacttcccggtg |
79 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||||| |
|
|
| T |
17662 |
aggagcagcaaaggcaaggacgtattcttgacctaatgatgaagcgccttaacattgattaaccaacctcccggtg |
17737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 9867387 - 9867297
Alignment:
| Q |
263 |
ttatttctgtataagtttgattcaagtttcactgtgaacaatgcttttgtaatattatttacaatgttacctatctatctctgtgtgtggg |
353 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867387 |
ttatttctttataagtttgattcaagtttcactgtgaacaatgcttttgtaatattatttacaatgttacctatctatctctgtgtgtggg |
9867297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 9867473 - 9867388
Alignment:
| Q |
150 |
gtgtctttcttttatttaatttaacgtctactctaaaactattttgttggtttcaatttgaaaatgctcttgcgagagttgtaata |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9867473 |
gtgtcattcttttatttaatttaacgtctactctaaaactgttttgttgctttcaatttgaaaatgctcttgcgagagttgtaata |
9867388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 9867546 - 9867471
Alignment:
| Q |
5 |
aggagaagcaaaggcaaggacgtattcttgacctaatgatgcagggccttaacattgattaa-caacttcccggtg |
79 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
9867546 |
aggagcagcaaaggcaaggacgtcttcttgacctaatgatgcagcgccttaacattgattaaccaacctcccggtg |
9867471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 9867297 - 9867261
Alignment:
| Q |
380 |
gattacatataaaggtttggcgttgtcgtaccctatg |
416 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
9867297 |
gattacatatacaggtttggcgttgtcttaccctatg |
9867261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 29064375 - 29064439
Alignment:
| Q |
345 |
gtgtgtgggttcgtaatttaattggtaatgtatgagattacatataaaggtttggcgttgtcgta |
409 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29064375 |
gtgtgtaggttcgtaatttaattggtaatgtatgagattacatataaaggtttaccgttgtcgta |
29064439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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