View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14184_low_8 (Length: 399)
Name: NF14184_low_8
Description: NF14184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14184_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 53126167 - 53126529
Alignment:
| Q |
18 |
attttaagaactaaaatagcaaattgatatcatagacatagagtggtttgattgggatgcatatgtagaaaagatttacattggctttacatcccttaaa |
117 |
Q |
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| T |
53126167 |
attttaagaactaaaatagcaaattgatatcata------gagtggtttgattgggatgcatatgtagaaaagatttacattggctttacatcccttaaa |
53126260 |
T |
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| Q |
118 |
ataaaatcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggatt |
217 |
Q |
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| T |
53126261 |
ataaaatcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggatt |
53126360 |
T |
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| Q |
218 |
attcagttcagtatatgcattgcaaagctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctg |
317 |
Q |
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| T |
53126361 |
attcagttcagtatatgcattgcaaagctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctg |
53126460 |
T |
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| Q |
318 |
agtttcattaacttacttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggttcttctc |
386 |
Q |
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| T |
53126461 |
agtttcattaacttacttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtttttctc |
53126529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 143 - 380
Target Start/End: Original strand, 53108482 - 53108721
Alignment:
| Q |
143 |
aattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaa |
242 |
Q |
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| T |
53108482 |
aattaattttgtacgctaatctttacatcataccttgagttgttcagcaaatctctgacgttgcactactggatcattcaattcagtatagccgttgcaa |
53108581 |
T |
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| Q |
243 |
agctgaaaagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctctta--ataataaatatcacctgagtttcattaacttacttcatgc |
340 |
Q |
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| T |
53108582 |
agctgaaaattaacagacaaacagtgacaagaatcaaaaagttgttaacttgcttttattttaataataatcacctgagtttcattaacttacttcatgc |
53108681 |
T |
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| Q |
341 |
ttattgacaaacaattcaaaacgctcggtcaggcctggtt |
380 |
Q |
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| T |
53108682 |
ttattgacgaacaattcaaaacgttcggtcaggcctggtt |
53108721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 150 - 380
Target Start/End: Original strand, 53113601 - 53113825
Alignment:
| Q |
150 |
ttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattcagttcagtatatgcattgcaaagctgaa |
249 |
Q |
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| T |
53113601 |
ttagtaagctaatctttagatcataccttgagttgttcggcaaatctctgacgttgcactacaggatcattcaattcagtatatgcattggaaagctgaa |
53113700 |
T |
|
| Q |
250 |
aagtaacaagaaaacaatgagaagaatcaataagctgttcacttgctcttaataataaatatcacctgagtttcattaacttacttcatgcttattgaca |
349 |
Q |
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| T |
53113701 |
agttaacagaaaaacagtgacaagaatcaaaaagttgttaact-----ttactaataataatcgcctgag-ttcatgaacttactttaagcttattaaca |
53113794 |
T |
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| Q |
350 |
aacaattcaaaacgctcggtcaggcctggtt |
380 |
Q |
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| T |
53113795 |
atcaactcaaaacgttctgtcaggcctggtt |
53113825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 53117831 - 53117965
Alignment:
| Q |
123 |
atcaaacagctagagaagagaattaatttagtaagctaatatttatatcataccttgagttgttgagcaaatctctcacgttgcacaacaggattattca |
222 |
Q |
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| T |
53117831 |
atcaaacaattagagcacagacttaatttagtacgctaatctttacatcataccttgagttgttcggcaaatctctgacgttgcactactggatcattca |
53117930 |
T |
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| Q |
223 |
gttcagtatatgcattgcaaagctgaaaagtaaca |
257 |
Q |
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| T |
53117931 |
attcagtatatgcattgcaaagctgaaaattaaca |
53117965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 53117999 - 53118047
Alignment:
| Q |
332 |
acttcatgcttattgacaaacaattcaaaacgctcggtcaggcctggtt |
380 |
Q |
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| T |
53117999 |
acttcatgcttattgacgaacaattaaaaacgcttcgtcagacctggtt |
53118047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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