View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_high_1 (Length: 599)
Name: NF14185_high_1
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 26 - 599
Target Start/End: Original strand, 37135112 - 37135685
Alignment:
| Q |
26 |
ataaattacacaagaatctcacactctcaaaagagattccacacacattctctcatagcacatacacatattaattcttgttctcccctatagactctta |
125 |
Q |
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| T |
37135112 |
ataaattacacaagaatctcacactctcaaaatagattccacacacattctctcatagcacatacacatattaattcttgttctcccctatagactctta |
37135211 |
T |
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| Q |
126 |
agattggtttaaactatattatatttttacaacagcattgcatgttgttgcattgatcaaattaaattatatgaatcaggacatgggaacagaaaacagt |
225 |
Q |
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| T |
37135212 |
agattggtttaaactatattatatttttacaacagcattgcatgttgttgcattgatcaaattaaattatatgaatcaggacatgggaacagaaaacagt |
37135311 |
T |
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| Q |
226 |
ggagcaagaaatgagtttttcccagaagattcattcaaaagtttaggagattatggaaaagcattcatgaaaacaccatacaggttgaaagatagaatgt |
325 |
Q |
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| T |
37135312 |
ggagcaagaaatgagtttttcccagaagattcattcaaaagtttaggtgattatggaaaagcattcatgaaaacaccatacaggttgaaagatagaatgt |
37135411 |
T |
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| Q |
326 |
ttacacgatcaaaagattacatggaaattgtggagatgaaagctagaagcagccaccaaatgaagaaaactctgaatggttgggatcttatttggttcgg |
425 |
Q |
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| T |
37135412 |
ttacacgatcaaaagattacatggaaattgtggagatgaaagctagaagcagccaccaaatgaagaaaactctgaatggttgggatcttatttggttcgg |
37135511 |
T |
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| Q |
426 |
aatcggggcagttgtcggttccggcatttttgttctcaccggtcttgaagctcgtgaggaggctggtcctgccgttgttttgtcgtatgctgtctccggt |
525 |
Q |
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| T |
37135512 |
aatcggcgcagttgtcggttccggcatttttgttctcaccggtcttgaagctcgtgaggaggctggtcctgccgttgttttgtcgtatgctgtctccggt |
37135611 |
T |
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| Q |
526 |
atctctgctttgttgtctgttttttgctacaccgaatttgcagtggaaattcctgtcgcaggtttattacactg |
599 |
Q |
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| T |
37135612 |
atctctgctttgttgtctgttttttgctacaccgaatttgcagtggaaattcctgtcgcaggtttattacactg |
37135685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 516 - 581
Target Start/End: Original strand, 10680327 - 10680392
Alignment:
| Q |
516 |
tgtctccggtatctctgctttgttgtctgttttttgctacaccgaatttgcagtggaaattcctgt |
581 |
Q |
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| T |
10680327 |
tgtctcgggcatttctgctatgttgtctgttttttgttacactgaatttgctgtggaaatccctgt |
10680392 |
T |
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