View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_high_19 (Length: 209)
Name: NF14185_high_19
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5639307 - 5639116
Alignment:
| Q |
18 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
117 |
Q |
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| T |
5639307 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
5639208 |
T |
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| Q |
118 |
gccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaatcacttggt |
209 |
Q |
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| T |
5639207 |
gccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaatcacttggt |
5639116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 22965517 - 22965335
Alignment:
| Q |
18 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
117 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22965517 |
tcttcaactttgctaatagattgggattttcctcaaggacgtcaatagttgtaatggcagcacttgcaagatatggaggcaaagaagcagaaaagacata |
22965418 |
T |
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| Q |
118 |
gccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaa |
200 |
Q |
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| T |
22965417 |
gccagagctactcaatcgctgccaaatttgaaaacataaagatattagagaagggaaatggatgagaaggcattatcaaccaa |
22965335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 38954406 - 38954582
Alignment:
| Q |
18 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
117 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38954406 |
tcttcaactttgctaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggcaaagaagcagaaaagacata |
38954505 |
T |
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| Q |
118 |
gccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaa |
200 |
Q |
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| T |
38954506 |
gccaga------atatcgctgccaaatttgaaaacataaagatattagagaagggaaatggatgagaaggcattatcaaccaa |
38954582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 21422897 - 21423032
Alignment:
| Q |
18 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
117 |
Q |
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||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
21422897 |
tcttcaactttgttaatacattgggattttcgtcaaggacatcaatagctgtaattgcagcgcttgcaagatatggaggcaaagaagcagaaaagacgta |
21422996 |
T |
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| Q |
118 |
gccagagctactcaatcgctgccaaggttgaaaaca |
153 |
Q |
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| T |
21422997 |
gccagagctactcaatcgctgtaaaagttgaaaaca |
21423032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 30634111 - 30634231
Alignment:
| Q |
18 |
tcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacata |
117 |
Q |
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||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
30634111 |
tcttcaactttgttaatatattgggattttcgtcaaggacatcaatagctgtaattgcagcgcttgcaagatatggaggcaaagaagcagaaaagacgta |
30634210 |
T |
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| Q |
118 |
gccagagctactcaatcgctg |
138 |
Q |
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| T |
30634211 |
gccagagctgctcaatcgctg |
30634231 |
T |
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