View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14185_high_4 (Length: 377)
Name: NF14185_high_4
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 42314116 - 42313772
Alignment:
| Q |
13 |
aaggtgccacgttcgaaacagttccaaaataaggaccagaatttccagcagaagcaactactactataccatttgctactgcatgaaaggaacctgtaga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42314116 |
aaggtgccacgttcgaaacagttccaaaataaggaccagaatttccagcagaagcaactactactataccatttgctactgcatgaaaggaacctataga |
42314017 |
T |
|
| Q |
113 |
tattgaatctgtaaaaaggttatgagtcttcataccaagagaaactgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42314016 |
tattgaatctgtaaaaaggttatgagtcttcataccaagagaaactgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatct |
42313917 |
T |
|
| Q |
213 |
gcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313916 |
gcatctgagcagccacctttccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactta |
42313817 |
T |
|
| Q |
313 |
ctccttgaacgaaattaccaccagctgttgatagagtgtgagaac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313816 |
ctccttgaacgaaattaccaccagctgttgatagagtgtgagaac |
42313772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 23040754 - 23040693
Alignment:
| Q |
156 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
217 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||||||||| || | ||||||||| |
|
|
| T |
23040754 |
actgaaagtacatcaacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatc |
23040693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 42734790 - 42734729
Alignment:
| Q |
156 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
217 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42734790 |
actgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42734729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 42762710 - 42762750
Alignment:
| Q |
162 |
agcacatcaacaccgtcacttatggcagcttcaaaaccagc |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42762710 |
agcacatcaacaccatcacttatggcagcttcaaaaccagc |
42762750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 42717095 - 42717156
Alignment:
| Q |
156 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatc |
217 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||||||||||||||| || | ||||||||| |
|
|
| T |
42717095 |
actgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaatatctgcatc |
42717156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 42743720 - 42743875
Alignment:
| Q |
156 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
255 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||||||||||||||| || | |||||||||| || ||| | | |||||| || || |||||||||| |
|
|
| T |
42743720 |
actgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
42743819 |
T |
|
| Q |
256 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
311 |
Q |
| |
|
| | |||||||| || ||||| |||| || ||||| ||||| ||| | |||||| |
|
|
| T |
42743820 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
42743875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 311
Target Start/End: Original strand, 42753079 - 42753234
Alignment:
| Q |
156 |
actgagagcacatcaacaccgtcacttatggcagcttcaaaaccagctaagacatctgcatctgagcagccacctttccaacacactttgtaggctgcaa |
255 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||||||||||||||| || | |||||||||| || ||| | | |||||| || || |||||||||| |
|
|
| T |
42753079 |
actgaaagcacgtcgacaccatcacttattgcagcttcaaaaccagccaaaatatctgcatcttgacatccatcgtcccaacaaaccttataggctgcaa |
42753178 |
T |
|
| Q |
256 |
catgagcttttggagaaccaccttttgcagtgccattaccatttccataaacactt |
311 |
Q |
| |
|
| | |||||||| || ||||| |||| || ||||| ||||| ||| | |||||| |
|
|
| T |
42753179 |
ctcgtgcttttggtgatccaccacttgctgttccatttccattgccaaatacactt |
42753234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 24266846 - 24266787
Alignment:
| Q |
233 |
ccaacacactttgtaggctgcaacatgagcttttggagaaccaccttttgcagtgccatt |
292 |
Q |
| |
|
||||||||||||||||||||||||||| | | |||| || |||||||| ||||| ||||| |
|
|
| T |
24266846 |
ccaacacactttgtaggctgcaacatgtgatcttggtgatccacctttagcagtaccatt |
24266787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University