View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14185_high_6 (Length: 331)

Name: NF14185_high_6
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14185_high_6
NF14185_high_6
[»] chr4 (16 HSPs)
chr4 (1-266)||(39886456-39886720)
chr4 (243-314)||(4471079-4471150)
chr4 (160-221)||(1137759-1137820)
chr4 (264-316)||(24193491-24193543)
chr4 (245-301)||(32066502-32066558)
chr4 (244-316)||(51555959-51556031)
chr4 (267-314)||(3891485-3891532)
chr4 (244-299)||(54325129-54325184)
chr4 (185-227)||(8469364-8469406)
chr4 (245-314)||(485989-486058)
chr4 (244-301)||(19422339-19422396)
chr4 (245-318)||(46796922-46796995)
chr4 (167-224)||(50742805-50742862)
chr4 (245-305)||(24160588-24160648)
chr4 (274-314)||(46860277-46860317)
chr4 (248-300)||(50742930-50742982)
[»] chr5 (14 HSPs)
chr5 (244-315)||(37063166-37063237)
chr5 (263-313)||(33464232-33464282)
chr5 (245-314)||(26516206-26516275)
chr5 (246-310)||(10391265-10391329)
chr5 (244-296)||(36646166-36646218)
chr5 (244-314)||(20982227-20982297)
chr5 (244-296)||(1019536-1019588)
chr5 (244-307)||(11835191-11835255)
chr5 (246-298)||(19113211-19113263)
chr5 (267-313)||(3951526-3951572)
chr5 (269-314)||(31687933-31687978)
chr5 (244-301)||(35095875-35095932)
chr5 (246-314)||(4991037-4991105)
chr5 (246-314)||(29588788-29588856)
[»] scaffold0590 (1 HSPs)
scaffold0590 (244-315)||(1166-1237)
[»] scaffold0275 (1 HSPs)
scaffold0275 (244-315)||(2738-2809)
[»] chr1 (16 HSPs)
chr1 (160-227)||(37811893-37811960)
chr1 (250-313)||(45667840-45667903)
chr1 (248-301)||(870966-871019)
chr1 (244-314)||(19389810-19389880)
chr1 (244-312)||(7274031-7274099)
chr1 (274-314)||(47885130-47885170)
chr1 (244-314)||(4549773-4549844)
chr1 (168-227)||(4549889-4549948)
chr1 (245-316)||(28768002-28768073)
chr1 (176-227)||(35669013-35669064)
chr1 (244-316)||(4276728-4276801)
chr1 (269-314)||(9506921-9506966)
chr1 (244-313)||(17420112-17420181)
chr1 (248-313)||(46504313-46504378)
chr1 (244-284)||(35017512-35017552)
chr1 (195-227)||(47917277-47917309)
[»] chr8 (14 HSPs)
chr8 (244-314)||(14482110-14482180)
chr8 (247-314)||(41336740-41336807)
chr8 (244-306)||(34788519-34788581)
chr8 (160-225)||(8629499-8629564)
chr8 (244-313)||(39392753-39392822)
chr8 (160-227)||(9700042-9700109)
chr8 (248-314)||(12833286-12833352)
chr8 (263-305)||(14247343-14247385)
chr8 (244-314)||(29699162-29699232)
chr8 (244-309)||(7026644-7026709)
chr8 (268-313)||(28769455-28769500)
chr8 (244-285)||(34522148-34522189)
chr8 (161-210)||(41442416-41442465)
chr8 (160-227)||(1930076-1930144)
[»] chr7 (10 HSPs)
chr7 (244-314)||(31341102-31341172)
chr7 (160-227)||(25670548-25670615)
chr7 (244-298)||(29574693-29574747)
chr7 (244-301)||(35536028-35536085)
chr7 (248-293)||(46945838-46945883)
chr7 (263-310)||(45078205-45078252)
chr7 (244-298)||(30751441-30751495)
chr7 (244-284)||(12110298-12110338)
chr7 (175-227)||(19719047-19719099)
chr7 (195-227)||(25511667-25511699)
[»] chr2 (19 HSPs)
chr2 (244-316)||(33197331-33197403)
chr2 (164-227)||(39621992-39622055)
chr2 (244-314)||(41880595-41880665)
chr2 (245-298)||(10190203-10190256)
chr2 (244-313)||(34339032-34339101)
chr2 (160-227)||(787373-787440)
chr2 (244-315)||(1493605-1493676)
chr2 (269-311)||(9404511-9404553)
chr2 (247-313)||(43203037-43203103)
chr2 (160-221)||(5902511-5902572)
chr2 (267-316)||(43965245-43965294)
chr2 (267-311)||(9878054-9878098)
chr2 (244-316)||(11393747-11393819)
chr2 (244-316)||(11410408-11410480)
chr2 (195-227)||(16947067-16947099)
chr2 (195-227)||(17017732-17017764)
chr2 (244-316)||(31461344-31461416)
chr2 (245-285)||(32821746-32821786)
chr2 (244-300)||(37033966-37034022)
[»] chr6 (14 HSPs)
chr6 (244-299)||(29269819-29269874)
chr6 (246-313)||(33068655-33068722)
chr6 (244-314)||(2514610-2514680)
chr6 (244-314)||(4308474-4308544)
chr6 (267-313)||(7351723-7351769)
chr6 (285-316)||(26328861-26328892)
chr6 (160-227)||(33887871-33887938)
chr6 (160-226)||(769180-769246)
chr6 (244-314)||(3217282-3217352)
chr6 (244-314)||(7713933-7714003)
chr6 (244-314)||(8349756-8349826)
chr6 (267-313)||(14706684-14706730)
chr6 (244-316)||(4248864-4248936)
chr6 (245-313)||(28660180-28660248)
[»] chr3 (12 HSPs)
chr3 (160-227)||(34707458-34707525)
chr3 (244-314)||(34958236-34958306)
chr3 (244-314)||(41028943-41029013)
chr3 (195-227)||(39602207-39602239)
chr3 (161-227)||(23808027-23808093)
chr3 (162-227)||(26878241-26878307)
chr3 (266-316)||(28842971-28843021)
chr3 (245-298)||(16790449-16790502)
chr3 (244-313)||(39342942-39343011)
chr3 (244-284)||(139923-139963)
chr3 (267-315)||(13804695-13804743)
chr3 (245-313)||(16790181-16790249)
[»] scaffold0024 (1 HSPs)
scaffold0024 (244-314)||(27484-27554)
[»] scaffold0022 (1 HSPs)
scaffold0022 (246-300)||(143155-143209)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 39886456 - 39886720
Alignment:
Q  1 atctttagagtagagatggtagattggactggaggtgctattaaagatgacaattcagcacttgatataaaacttgtagacctctcagttgtaagtgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39886456 atctttagagtagagatggtagattggactggaggtgctattaaagatgacaattcagcacttgatataaaacttgtagacctctcagttgtaagtgtaa 39886555  T
Q  101 ttaagagtatgtttggattagcttatttttctttatctattagcataaacactcgtgagttgtgacactgtttgagagaacttgtgaaagcattttatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39886556 ttaagagtatgtttggattagcttatttttctttatctattagcataaacactcgtgagttgtgacactgtttgagagaacttgtgaaagcattttatga 39886655  T
Q  201 catgttcataaattgttttcaacttatnnnnnnnnnngttcccctttattttatcttgtgtgataa 266  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  39886656 catgttcataaattgttttcaacttat-aaaaaaacagttcccctttattttatcttgtgtgataa 39886720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 4471150 - 4471079
Alignment:
Q  243 cctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||  | ||||||||||||    
T  4471150 cctttattttatcttttgttataaaaatagtttatgcataagcacttatataataattgcttatgctataag 4471079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 1137820 - 1137759
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttca 221  Q
    ||||||||||||||  |||||||| ||||| ||| ||||||||||||||||| |||||||||    
T  1137820 ttgtgacactgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttca 1137759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 24193543 - 24193491
Alignment:
Q  264 taaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||||  |||| |||||| | |||||||||||||||||||||||||||||    
T  24193543 taaaaataacttatacataagtacttatatgataagcgtttatgctataagtg 24193491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 32066502 - 32066558
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcg 301  Q
    ||||||||||||| ||| |||||| |||||||| |||||||| ||||| ||||||||    
T  32066502 tttattttatcttttgttataaaagtagtttatacataagcacttatacgataagcg 32066558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 51555959 - 51556031
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    |||||||||||||| ||| |||| ||||| |||| |||||||| |||||||||||  | ||||| ||||||||    
T  51555959 ctttattttatcttttgttataataatagcttatacataagcacttatatgataaatggttatgttataagtg 51556031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 3891532 - 3891485
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||||||||| |||||||||||| || | |||||||||    
T  3891532 aaatagtttattcataagcacttatatgataagtgtatgtgctataag 3891485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 54325129 - 54325184
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataag 299  Q
    |||||||||||||| ||| ||| ||||||||||| || ||||| ||||||||||||    
T  54325129 ctttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataag 54325184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 8469364 - 8469406
Alignment:
Q  185 tgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||| |||||||||||||||||| ||||||||| |||||    
T  8469364 tgaaagcaatttatgacatgttcataagttgttttcagcttat 8469406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 486058 - 485989
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||||| |||  || ||||||  ||| |||||||| || ||||||||||| ||||||||||||    
T  486058 tttattttatcttttgttttagaaatagcatatacataagcacttttatgataagcgcttatgctataag 485989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 19422396 - 19422339
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcg 301  Q
    ||||||| |||||| ||| ||| |||||  |||| |||||||||||||||||||||||    
T  19422396 ctttattatatcttttgttatagaaataacttatacataagcatttatatgataagcg 19422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 46796995 - 46796922
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtgat 318  Q
    ||||||||||| | ||| || ||||||| |||| |||||| | |||||||||||||  ||||| ||||||||||    
T  46796995 tttattttatcgtttgttatgaaaatagcttatgcataagaacttatatgataagcacttatgttataagtgat 46796922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 50742805 - 50742862
Alignment:
Q  167 actgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaact 224  Q
    ||||||||||||||||| ||||| || || ||||||||||||||   |||||||||||    
T  50742805 actgtttgagagaacttatgaaaacagttcatgacatgttcataccctgttttcaact 50742862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 24160588 - 24160648
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgttta 305  Q
    ||||| ||||||| ||| ||| ||| || ||||| ||||||| ||||||||||||||||||    
T  24160588 tttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcgttta 24160648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 46860317 - 46860277
Alignment:
Q  274 ttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  46860317 ttattcataagcacttatatcataagtgtttatgctataag 46860277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 50742930 - 50742982
Alignment:
Q  248 attttatcttgtgtgataaaaatagtttattcataagcatttatatgataagc 300  Q
    ||||||| |||||| |||||||||| |||| |||||||  |||||||||||||    
T  50742930 attttatgttgtgttataaaaatagcttatccataagcgcttatatgataagc 50742982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 37063166 - 37063237
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagt 315  Q
    |||||||||||||| ||| ||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  37063166 ctttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttatgctataagt 37063237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 33464232 - 33464282
Alignment:
Q  263 ataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  33464232 ataaaaatagcttattcgtaagcatttatttgataagcgtttatgctataa 33464282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 314
Target Start/End: Complemental strand, 26516275 - 26516206
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||||| |||  || |||||| |||| |||||||| |||||||||||||| ||||||||||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataag 26516206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 10391329 - 10391265
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgcta 310  Q
    |||||||||||| ||| |||||||||| |||| | |||||| |||||||||||| ||||||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttatgcta 10391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 36646218 - 36646166
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgat 296  Q
    ||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  36646218 ctttagtttatcttatgttataaaaatagtttatgcataagcatttatatgat 36646166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 20982227 - 20982297
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||| | ||| ||| |||||| |||| |||||||| |||||||||||||  ||||||||||||    
T  20982227 ctttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataag 20982297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 1019536 - 1019588
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgat 296  Q
    ||||| |||||||| ||| || |||||||||||| ||||||||||||||||||    
T  1019536 ctttagtttatcttttgttattaaaatagtttatgcataagcatttatatgat 1019588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 11835255 - 11835191
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttat-atgataagcgtttatg 307  Q
    |||||||||||||| ||| |||||||| |||||| ||||| || |||| ||||||||||||||||    
T  11835255 ctttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttatg 11835191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 19113211 - 19113263
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataa 298  Q
    ||||||||| || ||| ||||||||||||||| |||||||| |||||||||||    
T  19113211 ttattttattttttgttataaaaatagtttatacataagcaattatatgataa 19113263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 3951572 - 3951526
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||| ||||| |||||||| ||||||||||||| ||||||||||||    
T  3951572 aaatattttatacataagcacttatatgataagcatttatgctataa 3951526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 31687978 - 31687933
Alignment:
Q  269 atagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||| ||||||||||||| ||||||||||||||  |||||||||||    
T  31687978 atagcttattcataagcacttatatgataagcgcctatgctataag 31687933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 35095875 - 35095932
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcg 301  Q
    |||||||||||||| ||| ||| ||||||||||   ||||||| ||||||||||||||    
T  35095875 ctttattttatcttttgttatagaaatagtttaaatataagcacttatatgataagcg 35095932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 4991037 - 4991105
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||| ||||||| ||| |||||||||| |||| || || || ||||||||||| || ||||||||||||    
T  4991037 ttatgttatcttttgttataaaaatagcttatacacaaacacttatatgataatcgcttatgctataag 4991105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 29588856 - 29588788
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||| || ||| ||| |||||| |||| |||||||| |||||| | ||| ||||||||||||||    
T  29588856 ttattttatattttgttatagaaatagcttatacataagcacttatataaaaagtgtttatgctataag 29588788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 1166 - 1237
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagt 315  Q
    |||||||||||||| ||| ||| |||||| |||| |||||||| ||||||||||  ||||||||||||||||    
T  1166 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagt 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 2809 - 2738
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagt 315  Q
    |||||||||||||| ||| ||| |||||| |||| |||||||| ||||||||||  ||||||||||||||||    
T  2809 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagt 2738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 37811960 - 37811893
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||| |||| |||||||||||| ||||| ||  |||||||||||||||||| ||||||||||||||    
T  37811960 ttgtgatactggttgagagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttat 37811893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 45667840 - 45667903
Alignment:
Q  250 tttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||| |||||||||  |||||||||||||||||||| | ||||| |||||||||||    
T  45667840 tttatcttgtgtaataaaaataacttattcataagcatttatataacaagcgcttatgctataa 45667903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 871019 - 870966
Alignment:
Q  248 attttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcg 301  Q
    |||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  871019 attttatcttttgttataaaaatagtttatacataagcacttatatgataagcg 870966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 19389880 - 19389810
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||| |||||| |||||| ||  ||||| |||||   |||||||||||||||||||||||||||    
T  19389880 ctttattttatattgtgtaataaaagtaacttatttataagttattatatgataagcgtttatgctataag 19389810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 7274031 - 7274099
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctata 312  Q
    |||||||| ||||| ||| |||||||||   ||| ||||||||||||||||||||||  ||||||||||    
T  7274031 ctttatttcatcttttgttataaaaataacatatacataagcatttatatgataagcacttatgctata 7274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 47885130 - 47885170
Alignment:
Q  274 ttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  47885130 ttattcataagcaattatatgataagcgcttatgctataag 47885170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 4549844 - 4549773
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttat-atgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| ||| |||||| || | |||||||||||||  || |||||||||||||||||||    
T  4549844 ctttattttatcttttgttatagaaatagcttgtacataagcatttatcgtgctaagcgtttatgctataag 4549773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 4549948 - 4549889
Alignment:
Q  168 ctgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    ||||||| |||||||| ||||| ||  ||||||||||||||||| ||||||||| |||||    
T  4549948 ctgtttgggagaacttctgaaaacagattatgacatgttcataagttgttttcagcttat 4549889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 28768073 - 28768002
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||||||||| ||| || |||||| |||||  ||||||||||| |||||||| | |||| |||||||||    
T  28768073 tttattttatcttctgttatcaaaataatttatatataagcatttacatgataagtgcttatactataagtg 28768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 35669064 - 35669013
Alignment:
Q  176 gagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||| ||||||||  |||||| |||| |||||||||||||||||||||    
T  35669064 gagaacttatgaaagcagcttatgatatgtccataaattgttttcaacttat 35669013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 4276728 - 4276801
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataag-catttatatgataagcgtttatgctataagtg 316  Q
    |||||| ||||||| ||| ||| ||||||||||| | |||  ||||||||||||||| | ||||||||||||||    
T  4276728 ctttatattatcttttgttatagaaatagtttatacttaaaacatttatatgataagtgattatgctataagtg 4276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 9506966 - 9506921
Alignment:
Q  269 atagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||||||| |||||||||||  | ||||||||||||    
T  9506966 atagtttattcataagcacttatatgataaatgcttatgctataag 9506921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 17420181 - 17420112
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||||| | | ||||||||||||||| |||||| | |||| || |||||| |||| ||||||    
T  17420181 ctttattttatcttttcttataaaaatagtttatacataagtacttatgtgctaagcgcttatactataa 17420112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 46504313 - 46504378
Alignment:
Q  248 attttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||| ||| |||||||||||||||  | || || |||||||||||| | |||||||||||    
T  46504313 attttatcttttgttataaaaatagtttatagacaaacacttatatgataagagcttatgctataa 46504378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 35017552 - 35017512
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataag 284  Q
    |||||||||||||||| | |||||||||| |||||||||||    
T  35017552 ctttattttatcttgtattataaaaatagcttattcataag 35017512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 47917309 - 47917277
Alignment:
Q  195 ttatgacatgttcataaattgttttcaacttat 227  Q
    ||||||||||||||||| |||||||||||||||    
T  47917309 ttatgacatgttcataagttgttttcaacttat 47917277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 14482180 - 14482110
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||  | ||||||||||    
T  14482180 ctttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 41336740 - 41336807
Alignment:
Q  247 tattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||||| ||| ||||||||  ||||| ||||||||||||| |||||| || ||||||||||||    
T  41336740 tattttatcttttgtcataaaaatgatttatacataagcatttatttgataaacgcttatgctataag 41336807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 34788519 - 34788581
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttat 306  Q
    ||||||||||||||  || |||||||||| |||| | ||||||||||||||||||||| ||||    
T  34788519 ctttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataagcgcttat 34788581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 8629564 - 8629499
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaactt 225  Q
    |||||| || |||||||||||||| ||||| ||  |||||||||| |||||| |||||||||||||    
T  8629564 ttgtgagaccgtttgagagaacttatgaaaacaacttatgacatgatcataagttgttttcaactt 8629499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 39392753 - 39392822
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||||| ||| ||| ||||||||||| ||||  || |||||||||||||  |||||||||||    
T  39392753 ctttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataa 39392822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 9700109 - 9700042
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||| ||| ||||||||| ||||||||| || |||||||||||| |||||  |||||||| |||||    
T  9700109 ttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcaccttat 9700042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 12833352 - 12833286
Alignment:
Q  248 attttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||| |||||| ||||||||||| | | |||||||| || |||||||||||||  ||||||||||||    
T  12833352 atttgatcttgcgtgataaaaattgctcattcataaacacttatatgataagcccttatgctataag 12833286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 14247343 - 14247385
Alignment:
Q  263 ataaaaatagtttattcataagcatttatatgataagcgttta 305  Q
    ||||||| ||||||| |||||||| ||||||||||||||||||    
T  14247343 ataaaaacagtttatacataagcacttatatgataagcgttta 14247385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 29699232 - 29699162
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| ||| |||||  || | ||||||||||||||||||||   |||||||||||||    
T  29699232 ctttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataag 29699162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 7026709 - 7026644
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgct 309  Q
    |||||||||||||| ||| |||| | ||| |||| |||||||| |||||||||||  |||||||||    
T  7026709 ctttattttatcttttgttataacagtagcttatgcataagcacttatatgataaatgtttatgct 7026644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 28769455 - 28769500
Alignment:
Q  268 aatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||| |||| ||||||||||||||||||||||  |||||||||||    
T  28769455 aatagcttatacataagcatttatatgataagcacttatgctataa 28769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 34522148 - 34522189
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagc 285  Q
    |||||||||||||||||| ||| |||||| ||||||||||||    
T  34522148 ctttattttatcttgtgtcatagaaatagcttattcataagc 34522189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 41442416 - 41442465
Alignment:
Q  161 tgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcata 210  Q
    ||||| ||||||||| ||||||| ||||| || |||||||||||||||||    
T  41442416 tgtgagactgtttgacagaacttatgaaaacaatttatgacatgttcata 41442465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 1930144 - 1930076
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgaca-tgttcataaattgttttcaacttat 227  Q
    |||||||| | |||| |||||||||||||| || ||||||||| |||||||||  |||||||| |||||    
T  1930144 ttgtgacattatttgggagaacttgtgaaaacagtttatgacattgttcataagctgttttcagcttat 1930076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 31341172 - 31341102
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| ||| |||||| |||| |||||||||||| |||||||||| |||||| |||||    
T  31341172 ctttattttatcttttgttatacaaatagcttatacataagcatttagatgataagcgcttatgcaataag 31341102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 25670548 - 25670615
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||| ||||||||||| ||||| ||||| ||  |||||||||||| |||||||||||||| |||||    
T  25670548 ttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataaattgttttcagcttat 25670615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 29574693 - 29574747
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataa 298  Q
    |||||||| ||||| ||| |||||||||| |||| ||||||||||||||||||||    
T  29574693 ctttatttcatcttttgtcataaaaatagcttatacataagcatttatatgataa 29574747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 35536085 - 35536028
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcg 301  Q
    |||||||||||||| ||| ||| |||||| |||| ||||||| |||||||||||||||    
T  35536085 ctttattttatcttatgttatagaaatagcttatacataagcctttatatgataagcg 35536028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 46945883 - 46945838
Alignment:
Q  248 attttatcttgtgtgataaaaatagtttattcataagcatttatat 293  Q
    |||||||||||||| ||| |||||| ||||||||||||||||||||    
T  46945883 attttatcttgtgttatacaaatagcttattcataagcatttatat 46945838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 45078252 - 45078205
Alignment:
Q  263 ataaaaatagtttattcataagcatttatatgataagcgtttatgcta 310  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||||    
T  45078252 ataaaaatagcttatacataagcacttatatgataaacgtttatgcta 45078205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 30751495 - 30751441
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataa 298  Q
    ||||||||||| || ||| | |||||||||||||||| ||||| |||||||||||    
T  30751495 ctttattttatattttgttacaaaaatagtttattcacaagcacttatatgataa 30751441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 12110338 - 12110298
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataag 284  Q
    |||||||||||||||||| ||| |||||| |||||||||||    
T  12110338 ctttattttatcttgtgtaatagaaataggttattcataag 12110298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 19719099 - 19719047
Alignment:
Q  175 agagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    ||||||||| ||||| ||  |||||||||||||||||| |||||||| |||||    
T  19719099 agagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 25511699 - 25511667
Alignment:
Q  195 ttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||||||||||||||||| ||||||||||    
T  25511699 ttatgacatgttcataaattgtcttcaacttat 25511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 33197331 - 33197403
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||| |||||| ||| ||| |||||| ||||  ||||||| |||||||||||||||||||| ||||||||    
T  33197331 ctttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataagtg 33197403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 39622055 - 39621992
Alignment:
Q  164 gacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||||||||||||||| ||||| ||  ||||||||  ||||||||||||||||| |||||    
T  39622055 gacactgtttgagagaacttatgaaaacaacttatgacaaattcataaattgttttcagcttat 39621992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 41880595 - 41880665
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||| ||||| ||| ||||||| |||| ||||||| ||| |||||||||| || |||||||||    
T  41880595 ctttattttatcgtgtgtaatagaaatagtatatttataagcaattacatgataagcgcttgtgctataag 41880665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 10190256 - 10190203
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataa 298  Q
    ||||||||||| | ||| ||||||||||||||| |||||||| |||||||||||    
T  10190256 tttattttatcctttgttataaaaatagtttatacataagcacttatatgataa 10190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 34339101 - 34339032
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||||||||||||  |  ||| ||| ||||||| |||||||| |||||||||||| |||||||||||||    
T  34339101 ctttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttatgctataa 34339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 787440 - 787373
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    ||||||||||||||| |||||||| ||||| ||  ||||||||||| |||||  |||||||| |||||    
T  787440 ttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 1493605 - 1493676
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagt 315  Q
    |||||||||||||  ||| ||| ||| |||||||  ||||||| |||||||||||| |||||||| ||||||    
T  1493605 ctttattttatctattgttatagaaagagtttataaataagcaattatatgataagagtttatgcgataagt 1493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 9404553 - 9404511
Alignment:
Q  269 atagtttattcataagcatttatatgataagcgtttatgctat 311  Q
    ||||||||| |||||||| |||||||||||| |||||||||||    
T  9404553 atagtttatacataagcacttatatgataagtgtttatgctat 9404511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 43203103 - 43203037
Alignment:
Q  247 tattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||| || ||| ||||||||||||||| |||||  || ||| ||| |||||||||||||||||    
T  43203103 tattttattttttgttataaaaatagtttatgcataattatctatgtgacaagcgtttatgctataa 43203037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 5902511 - 5902572
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttca 221  Q
    |||||| ||||||||  ||||||| ||||| ||  |||||||||||||||||| ||||||||    
T  5902511 ttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttca 5902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 43965245 - 43965294
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    |||||| |||||||||| || |||||||||||| | ||||||||||||||    
T  43965245 aaatagcttattcataaacacttatatgataagtgcttatgctataagtg 43965294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 9878054 - 9878098
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctat 311  Q
    ||||||||||| |||||||| ||||||||| | ||||||||||||    
T  9878054 aaatagtttatacataagcacttatatgattaacgtttatgctat 9878098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 11393747 - 11393819
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||| |||||| ||  ||| |||||| |||| |||||||| ||| |||||||  ||||||||||||||||    
T  11393747 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtg 11393819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Original strand, 11410408 - 11410480
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||| |||||| ||  ||| |||||| |||| |||||||| ||| |||||||  ||||||||||||||||    
T  11410408 ctttattgtatcttttggtatagaaatagcttatacataagcacttaaatgataaatgtttatgctataagtg 11410480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 16947099 - 16947067
Alignment:
Q  195 ttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||||||||||||||| ||||||||||||    
T  16947099 ttatgacatgttcataaattattttcaacttat 16947067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 17017764 - 17017732
Alignment:
Q  195 ttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||||||||||||||| ||||||||||||    
T  17017764 ttatgacatgttcataaattattttcaacttat 17017732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 31461416 - 31461344
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    |||||||||||||| ||| ||| |||||| ||||  |||| || ||||||||||  ||||||||||| |||||    
T  31461416 ctttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgctagaagtg 31461344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 32821786 - 32821746
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagc 285  Q
    ||||||||||||| ||| |||||||||| ||||||||||||    
T  32821786 tttattttatcttttgttataaaaatagcttattcataagc 32821746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 37034022 - 37033966
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagc 300  Q
    |||||||||||||| | | ||| ||||||||||| |||||| ||| |||||||||||    
T  37034022 ctttattttatctttttttatagaaatagtttatacataagtattcatatgataagc 37033966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 29269874 - 29269819
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataag 299  Q
    |||||||||||||| ||| ||| ||||||||||| || ||||||||||||||||||    
T  29269874 ctttattttatcttctgttatagaaatagtttatacacaagcatttatatgataag 29269819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 33068655 - 33068722
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||| ||| ||| |||||  |||| ||||||||||||| ||||||||| |||||||||||    
T  33068655 ttattttatcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataa 33068722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 2514680 - 2514610
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| | | ||| |||||| |||| |||||||| ||| ||||||||| |||||||||||||    
T  2514680 ctttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 4308544 - 4308474
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||| |||||||||| | ||  | ||||||||||||||||||||| ||||||||||| || |||||||||    
T  4308544 ctttaatttatcttgttttatggagatagtttattcataagcatttgtatgataagcgcttgtgctataag 4308474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 7351723 - 7351769
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||||    
T  7351723 aaatagtttatacataagcatttatatgataagagcttatgctataa 7351769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 316
Target Start/End: Complemental strand, 26328892 - 26328861
Alignment:
Q  285 catttatatgataagcgtttatgctataagtg 316  Q
    ||||||||||||||||||||||||||||||||    
T  26328892 catttatatgataagcgtttatgctataagtg 26328861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 33887938 - 33887871
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||| |||||||||||| || |||||  |  |||||||||||||| || |||||||||||||||    
T  33887938 ttgtgacattgtttgagagaatttatgaaaatagcttatgacatgttcacaagttgttttcaacttat 33887871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 769246 - 769180
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaactta 226  Q
    |||||| ||||||||   |||||| ||||| ||| |||||||||||||||||  |||||||||||||    
T  769246 ttgtgagactgtttggatgaacttatgaaaacatcttatgacatgttcataagctgttttcaactta 769180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 3217282 - 3217352
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| | | | |||||||| |||| |||||||| ||||||||||| || |||| |||||||    
T  3217282 ctttattttatcttctcttacaaaaatagcttatacataagcacttatatgataatcgcttatactataag 3217352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 7714003 - 7713933
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| || ||| |||||||| |||||||  |||||||||| | | ||||||||||||    
T  7714003 ctttattttatcttttgttatgaaagtagtttatacataagctcttatatgataggtggttatgctataag 7713933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 8349756 - 8349826
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| | | ||||||||||| || || || |||||||||||| | ||||||||||||    
T  8349756 ctttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttatgctataag 8349826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 14706730 - 14706684
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||||||||||| |||| ||||||||| |||||| ||||    
T  14706730 aaatagtttattcataagcacttatttgataagcgcttatgccataa 14706684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 4248936 - 4248864
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    |||||||||||||| ||| ||  |||||| ||||  ||||||| |||||||| ||||| |||||||| |||||    
T  4248936 ctttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttatgctagaagtg 4248864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 28660180 - 28660248
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||||||||||| | | ||||||||| |||||  |||| || |||||||||||| |||||| ||||||    
T  28660180 tttattttatcttttatcataaaaataatttatatataaacacttatatgataagtgtttatactataa 28660248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 34707458 - 34707525
Alignment:
Q  160 ttgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    |||||| ||||||||||||||||| ||||| ||  || |||||||| ||||| |||||||||||||||    
T  34707458 ttgtgagactgtttgagagaacttttgaaaacaacttgtgacatgtccataagttgttttcaacttat 34707525  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 34958306 - 34958236
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||||||| ||| ||||||||||||||||||   |||||||||   || ||||||||||||    
T  34958306 ctttattttatcttgtgttatagaaatagtttattcataagtgcttatatgatgcacgcttatgctataag 34958236  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 41028943 - 41029013
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    ||||||||| |||| ||| ||| |||||| |||| |||||||| ||||||||||||| |||| ||||||||    
T  41028943 ctttattttttcttttgttatagaaatagcttatacataagcacttatatgataagcatttaagctataag 41029013  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 39602207 - 39602239
Alignment:
Q  195 ttatgacatgttcataaattgttttcaacttat 227  Q
    |||||||||||||||||||||||||||||||||    
T  39602207 ttatgacatgttcataaattgttttcaacttat 39602239  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 23808027 - 23808093
Alignment:
Q  161 tgtgacactgtttgagagaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 227  Q
    ||||| || ||||| || ||||| ||||||||  |||||||||||||| |||||||||||| |||||    
T  23808027 tgtgagacggtttgggaaaacttatgaaagcagcttatgacatgttcacaaattgttttcatcttat 23808093  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 26878307 - 26878241
Alignment:
Q  162 gtgacactgtttgagagaacttgtgaaagcattttatgaca-tgttcataaattgttttcaacttat 227  Q
    |||| |||||||||||||||||||||||  |  |||||||| |||||||||| |||||||| |||||    
T  26878307 gtgaaactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgttttcagcttat 26878241  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 28842971 - 28843021
Alignment:
Q  266 aaaatagtttattcataagcatttatatgataagcgtttatgctataagtg 316  Q
    ||||||| |||| |||||||| |||||||||||||| ||||| ||||||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgcttatgatataagtg 28843021  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 16790449 - 16790502
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataa 298  Q
    ||||||||||||  ||| |||||||||| |||| |||||||| |||||||||||    
T  16790449 tttattttatctgttgttataaaaatagcttatacataagcacttatatgataa 16790502  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 39343011 - 39342942
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    |||||||||||||||| | || ||||||| ||||||| ||| | ||| |||||||| | |||||||||||    
T  39343011 ctttattttatcttgtattatgaaaatagcttattcacaagtacttaaatgataagtgattatgctataa 39342942  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 139963 - 139923
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataag 284  Q
    |||||||||||||||||| ||| |||||| |||||||||||    
T  139963 ctttattttatcttgtgtaatagaaatagcttattcataag 139923  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 13804743 - 13804695
Alignment:
Q  267 aaatagtttattcataagcatttatatgataagcgtttatgctataagt 315  Q
    ||||||||||| ||||| || ||| ||||| ||||||||||||||||||    
T  13804743 aaatagtttatacataaacacttaaatgatcagcgtttatgctataagt 13804695  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 16790181 - 16790249
Alignment:
Q  245 tttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataa 313  Q
    ||||||||||||| ||| ||| |||||  ||||  ||||||| ||||||||||| || |||||||||||    
T  16790181 tttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 27554 - 27484
Alignment:
Q  244 ctttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagcgtttatgctataag 314  Q
    |||||||||||||| ||| ||| |||||  |||| |||||||| ||| |||||||| | ||||||||||||    
T  27554 ctttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataag 27484  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 143155 - 143209
Alignment:
Q  246 ttattttatcttgtgtgataaaaatagtttattcataagcatttatatgataagc 300  Q
    |||||||||||||||| ||| |||||| | ||||||||||  |||||||||||||    
T  143155 ttattttatcttgtgttatagaaatagctaattcataagcgcttatatgataagc 143209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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