View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_high_8 (Length: 295)
Name: NF14185_high_8
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 44923518 - 44923658
Alignment:
| Q |
21 |
tcagtctaatcagcttcatgaggatcagattgtgaaggggctcatgaaactagtcactaatgggaaggattatgatgttacgtttgataagtttccttat |
120 |
Q |
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| T |
44923518 |
tcagtctaatcagcttcatgaggatcagattgtgaaggggctcatgaaactagtcaccaatgggaaggattatgatgttacgtttgataagtttccttat |
44923617 |
T |
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| Q |
121 |
tacttaaggtactgtaaagtgttaggttattttctagcaaa |
161 |
Q |
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| T |
44923618 |
tacttaaggtactgtaaagtgttaggttattttctagcaaa |
44923658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 44923686 - 44923776
Alignment:
| Q |
189 |
gaatatttgaattacacatatttctggtcttattactttaaacgtgctgtattatggttatgttgcattatgatgtcttgggttgtgaaaa |
279 |
Q |
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| T |
44923686 |
gaatatttgaattacacatatttctggtcttattactttaaacgtggtgtattatggttatgttgcattatgatgtcttgggttgtgaaaa |
44923776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 44931552 - 44931650
Alignment:
| Q |
39 |
tgaggatcagattgtgaaggggctcatgaaactagtcactaatgggaaggattatgatgttacgtttgataagtttccttattacttaaggtactgtaa |
137 |
Q |
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| T |
44931552 |
tgagaatcaaattgtgaagggactcaagaaactagtcattgatggaaaggatagtaaagttacatttgatgactttccttattacttgaggtattgtaa |
44931650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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