View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14185_low_1 (Length: 970)

Name: NF14185_low_1
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14185_low_1
NF14185_low_1
[»] chr7 (2 HSPs)
chr7 (1-662)||(49008460-49009121)
chr7 (760-955)||(49009180-49009364)
[»] chr8 (8 HSPs)
chr8 (58-223)||(8945547-8945712)
chr8 (324-382)||(9947862-9947920)
chr8 (30-223)||(8958330-8958523)
chr8 (340-397)||(8958637-8958694)
chr8 (42-223)||(8974752-8974933)
chr8 (28-142)||(8963342-8963456)
chr8 (270-382)||(8945391-8945503)
chr8 (342-382)||(8975049-8975089)
[»] chr1 (2 HSPs)
chr1 (28-239)||(34962314-34962525)
chr1 (353-397)||(25927947-25927991)
[»] chr2 (1 HSPs)
chr2 (1-142)||(21686791-21686932)


Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Original strand, 49008460 - 49009121
Alignment:
Q  1 acattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008460 acattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcagg 49008559  T
Q  101 aaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  49008560 aaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaacccttct 49008659  T
Q  201 ttggaccttaattacccttctttgatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttg 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008660 ttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttg 49008759  T
Q  301 gagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008760 gagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaa 49008859  T
Q  401 ggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008860 ggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttggacagactcgaaacacaatgtcagaagt 49008959  T
Q  501 cccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaatattaatgattgcttaggttaagatgaggatatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008960 cccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaatattaatgattgcttaggttaagatgaggatatt 49009059  T
Q  601 atgcttctaccaatccttgatttcatttttctcaattcatgaccagatcattacttgatatt 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49009060 atgcttctaccaatccttgatttcatttttctcaattcatgaccagatcattacttgatatt 49009121  T

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Target: chr7; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 760 - 955
Target Start/End: Original strand, 49009180 - 49009364
Alignment:
Q  760 gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa 859  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49009180 gttaatctccaaatcatagaaaaactcaccaacattacattgttttaaatgtaactcgactttggttgcttaggcaaagtctcatgttcaaacagtataa 49009279  T
Q  860 atttaaaaaatacagttggaggggagacagacaccataaaaaacgacgagccaaattcatgataaataaacaaaatagcaaaatttccttccatat 955  Q
    |||||||||||||||||||||||           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49009280 atttaaaaaatacagttggaggg-----------cataaaaaacgacgagccaaattcatcataaataaacaaaatagcaaaatttccttccatat 49009364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 58 - 223
Target Start/End: Complemental strand, 8945712 - 8945547
Alignment:
Q  58 atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc 157  Q
    ||||||||||||||||||| ||||| |||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||| || || || ||| |    
T  8945712 atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac 8945613  T
Q  158 gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttt 223  Q
      | || || ||||| ||||| ||  |||||||| | ||||| ||||| |||||||||||||||||    
T  8945612 tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttt 8945547  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
Q  324 gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt 382  Q
    ||||||||||| |||||  ||||||| ||||| ||||||||||||||||||||||||||    
T  9947920 gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt 9947862  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 8958330 - 8958523
Alignment:
Q  30 cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg 129  Q
    ||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| ||| |||||||||  ||   |||||||||||| |||||||| ||||    
T  8958330 ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg 8958429  T
Q  130 cattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttt 223  Q
    || | | || | | || || || ||| |  ||||||| ||||| ||||  ||  |||| ||||| ||||||||||| ||||| |||||||||||    
T  8958430 cacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttt 8958523  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 340 - 397
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
Q  340 ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 397  Q
    |||||||||||||||| ||||||||||||||||||||||| || || ||||| |||||    
T  8958637 ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga 8958694  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 8974752 - 8974933
Alignment:
Q  42 ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca 141  Q
    ||||| || |||||||| ||||| | ||||||| | |||||||||||||||||||  ||   |||||||||||| |||||||| |||||| | |||||||    
T  8974752 ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca 8974851  T
Q  142 ctcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttt 223  Q
    | || || || ||| |   ||| || ||||| |||  |||  |||||||| | ||||| ||||| || ||||||||||||||    
T  8974852 cacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttt 8974933  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
Q  28 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 127  Q
    ||||||| || |||||||| || |||||||| || |||| ||||||||| ||||| ||||||||||||   ||   |||||||||||| ||| |||| ||    
T  8963342 caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg 8963441  T
Q  128 tgcattaaacttcac 142  Q
    |||| | ||||||||    
T  8963442 tgcacttaacttcac 8963456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
Q  270 caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa 369  Q
    ||||||||||| |||||||| ||||||||||| |||| || | |||| || || || | |||||  ||| ||||||| | || |||||||| ||||||||    
T  8945503 caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa 8945404  T
Q  370 acaagttggtgtt 382  Q
    | |||||| ||||    
T  8945403 ataagttgatgtt 8945391  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
Q  342 gaagggttccatgttagtgttatcccaaacaagttggtgtt 382  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  8975049 gaagggttccatgttagagttatcccaaataagttggtgtt 8975089  T

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Target: chr1 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 34962525 - 34962314
Alignment:
Q  28 cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg 127  Q
    ||||||| || |||||||| || ||| | ||||| |||||||||||||| ||||| |||||||||||||  ||   ||||||||||||||||||||| ||    
T  34962525 caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg 34962426  T
Q  128 tgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttctttgatt 227  Q
    |||| | || | | | || || || ||| |  ||||||| ||||| ||||  ||  |||||||| | ||||| ||||| ||||| ||||||||||| |||    
T  34962425 tgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttatt 34962326  T
Q  228 tcctttttcaat 239  Q
     | |||||||||    
T  34962325 gcttttttcaat 34962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
Q  353 tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga 397  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||    
T  25927991 tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga 25927947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21686932 - 21686791
Alignment:
Q  1 acattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcagg 100  Q
    ||||||| |||||| ||||| ||||  | ||||| || |||||||| || ||||| || || |||||||||||||||||||| ||||||||||||   ||    
T  21686932 acattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcgg 21686833  T
Q  101 aaaacaagattatgtgaatcttctatgtgcattaaacttcac 142  Q
       |||||||||| | |||||||| |||||| | ||||||||    
T  21686832 tgtacaagattatattaatcttctttgtgcacttaacttcac 21686791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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