View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14185_low_16 (Length: 241)
Name: NF14185_low_16
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_16 |
 | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0110 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 36989 - 37197
Alignment:
| Q |
14 |
taggcacacttgaccgaactgtgtaaataaacaattgtattccattgttttcgatttgcatttctttattcttcttttactagttattgttctaacaaac |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989 |
taggcacacttgaccgaactgtgtaaacaaacaattgtgttccattgttttcgatttgcatttctttattcttcttttactagttattgttctaacaaac |
37088 |
T |
|
| Q |
114 |
tacaaattcttcaaattgcaataacaacgtaatgactaaatctcaaaacttcatcaaaatcaattttttactcaccccctttatgaagccatgaatatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37089 |
tacaaattcttcaaattgcaataacaacgtaatgactaaatctcaaaacttcatcaaaatcaattttttactcaccccctttatgaagccatgaatatgc |
37188 |
T |
|
| Q |
214 |
atcaatacc |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
37189 |
atcaatacc |
37197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 17476211 - 17476285
Alignment:
| Q |
37 |
taaataaacaattgtattccattgttttcgatttgcatttctttattcttcttttactagttattgttctaacaa |
111 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
17476211 |
taaacaaacaattgtgttccattgtttgcgatttgcgtttctttattcttcttttactggttgttgttttaacaa |
17476285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 33888435 - 33888359
Alignment:
| Q |
35 |
tgtaaataaacaattgtattccattgttttcgatttgcatttctttattcttcttttactagttattgttctaacaa |
111 |
Q |
| |
|
|||||| |||| ||||| || |||||||| || || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33888435 |
tgtaaacaaacgattgtgtttcattgtttgtgacttacatttctttattcttcttttagcggttattgttctaacaa |
33888359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 47252741 - 47252797
Alignment:
| Q |
42 |
aaacaattgtattccattgttttcgatttgcatttctttattcttcttttactagtt |
98 |
Q |
| |
|
|||||| ||| ||| ||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
47252741 |
aaacaactgtgttctattgtttgcgatttacgtttctttattcttcttttactagtt |
47252797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 31158874 - 31158928
Alignment:
| Q |
56 |
cattgttttcgatttgcatttctttattcttcttttactagttattgttctaaca |
110 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
31158874 |
cattgtttgcgatttgtgtttctttattcttcttttacgagttgatgttctaaca |
31158928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 15065908 - 15065840
Alignment:
| Q |
42 |
aaacaattgtattccattgttttcgatttgcatttctttattcttcttttactagttattgttctaaca |
110 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| ||| |||| | |||||||||||||| ||||||||||| |
|
|
| T |
15065908 |
aaacgattgaattccattgtttgcaatttgagtttatttagttttcttttactagttgttgttctaaca |
15065840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 107
Target Start/End: Complemental strand, 44844757 - 44844724
Alignment:
| Q |
74 |
tttctttattcttcttttactagttattgttcta |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
44844757 |
tttctttattcttcttttcctagttattgttcta |
44844724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 29844038 - 29843981
Alignment:
| Q |
51 |
tattccattgttttcgatttgcatttctttattcttcttttactagttattgttctaa |
108 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||| | |||||||||||| |||||| |
|
|
| T |
29844038 |
tattccattgtttgtgatttgaatttctttaatcttttcttactagttattattctaa |
29843981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University