View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14185_low_19 (Length: 227)
Name: NF14185_low_19
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_19 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 43070617 - 43070837
Alignment:
| Q |
7 |
aatctattactcttgttggtcaagttgagaagtctctccttctaagagatgcttctcaactgcaaatcatgttgaaaagttacggtagttgagaattttc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43070617 |
aatctattactcttgttggtcaagttgagaagtctctccttctaagagatgcttctcaactgcaaatcatgttgaaaagttaccatagttgagaattttc |
43070716 |
T |
|
| Q |
107 |
aaaggaagtgactatgatgtggaagattctaaataaggaaatctcagtccaacaatatttcgaaaaggtgtgtaaataggtttatcacctacattagatg |
206 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43070717 |
aaagcaagtgactatgatgtgaaagattctaaataaggaaatctccgtccaacaatattttgaaaaggtgtgtaaataggtttatcatctacattagatg |
43070816 |
T |
|
| Q |
207 |
caacaaaacaatcaacaacaa |
227 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
43070817 |
caacaaaacaatcaaccacaa |
43070837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University