View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_low_20 (Length: 214)
Name: NF14185_low_20
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 13646642 - 13646462
Alignment:
| Q |
16 |
atgaactgacatgctacaacaaattttattagtgttttgtnnnnnnnnnnnnntcatttgtaataatattcgggttgctcaataataacaattaaaaaca |
115 |
Q |
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| T |
13646642 |
atgaactgacatgctacaacaaattttattagtgttttgtaaaaaaagaaaaatcatttgtaataatattcgggttgctcaataataacaattaaaaaca |
13646543 |
T |
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| Q |
116 |
catattgtcacgagaaacataactcagagccggcatgtatatttcattatgcatgagttagagttcgcattctggatcctc |
196 |
Q |
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| T |
13646542 |
catattgtcacgagaaacataactcagagccgacatgtatatttcattatgcatgagttagagttcgcactccggatcctc |
13646462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 13747067 - 13746887
Alignment:
| Q |
16 |
atgaactgacatgctacaacaaattttattagtgttttgtnnnnnnnnnnnnntcatttgtaataatattcgggttgctcaataataacaattaaaaaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13747067 |
atgaactgacatgctacaacaaattttattagtgttttgtaaaaaaagaaaaatcatttgtaataatattcgggttgctcaataataacaattaaaaaca |
13746968 |
T |
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| Q |
116 |
catattgtcacgagaaacataactcagagccggcatgtatatttcattatgcatgagttagagttcgcattctggatcctc |
196 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
13746967 |
catattgtcacgagaaacataactcagagccgacatgtatatttcattatgcatgagttagagttcgcactccggatcctc |
13746887 |
T |
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