View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_low_3 (Length: 520)
Name: NF14185_low_3
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_3 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 6672684 - 6672393
Alignment:
| Q |
15 |
cataggaatgaatactaacacctcaaacaaaagctaatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6672684 |
cataggaatgaatactaacacctcaaacaaaagctaatattgctcttaatgttgctctgctacagcagatagcaacattaacaaaaattaagatttgaaa |
6672585 |
T |
|
| Q |
115 |
tcagaaaacaatactaacaccttcaagaaaaagttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaacaacatgat |
214 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
6672584 |
tcagaaaacaatactaacaccttaaagaaaaagt---taatgttgctctgc-ataacagctagtaacaagaacagaaattgagattttcaacaatatgat |
6672489 |
T |
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| Q |
215 |
aaggatagaatgaatggtattagatagatatgtgatgaaatctacctgactgaatcgtgttctggattaacctcagcaaaagcaagacgaagatga |
310 |
Q |
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| T |
6672488 |
aaggatagaatgattggtattagatagatatgtgatggaatctacctgattgaatcgtgttctggattaacctcagcaaaagcaagacgaagatga |
6672393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 12592727 - 12592912
Alignment:
| Q |
20 |
gaatgaatactaacacctcaaa-caaaagctaatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatca- |
117 |
Q |
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|||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| || ||||||||||||||| ||||| |||||| |||| | |
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| T |
12592727 |
gaatgaatactaacacctcaaagcaaaagctaatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgagattttaaataaa |
12592826 |
T |
|
| Q |
118 |
-gaaaacaatactaacaccttcaagaaaaagttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
205 |
Q |
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| T |
12592827 |
taaaaacaataataacaccttaaagcaaaag---ccaatgttgctctgctacagcagctagcaacagtaacgaaaattgagatttttaa |
12592912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 6672204 - 6672142
Alignment:
| Q |
310 |
aagaaagtgacgagaatgggtttcttaatattttgtgaaataaattttcatttttgatttttc |
372 |
Q |
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| T |
6672204 |
aagaaagtgacgagaatgggtttcttaatattttgtgaaataaattttcagtcttgatttttc |
6672142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 453 - 505
Target Start/End: Complemental strand, 6672063 - 6672011
Alignment:
| Q |
453 |
aacattgaacccaagtatgcaaaacacattcctcaaaccactttccaaaaact |
505 |
Q |
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| T |
6672063 |
aacattgaacccaagtatgcaaaacacattcctcaaacccctttccaaaaact |
6672011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 15690527 - 15690603
Alignment:
| Q |
234 |
ttagatagatatgtgatgaaatctacctgactgaatcgtgttctggattaacctcagcaaaagcaagacgaagatga |
310 |
Q |
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| T |
15690527 |
ttagataaacatgtgatggaatctacccgactgaatcgtgttctgagttaacctcatcaaaagcaagacgaagatga |
15690603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 30822383 - 30822539
Alignment:
| Q |
49 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaat-cagaaaacaatactaacacct--tcaagaaaa |
145 |
Q |
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|||| |||| ||| |||||||||||||||| || ||||||||||||||| ||||||| |||| |||| | |||||||||||||||||| | ||||||| |
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| T |
30822383 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattaaaattttaaatagaaaaaacaatactaacaccttataaagaaaa |
30822482 |
T |
|
| Q |
146 |
agttaataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
205 |
Q |
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| T |
30822483 |
ag---ccaatgttgtgctgctacagcacctagcaacattaacagaaattgagatttttaa |
30822539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 30813120 - 30813209
Alignment:
| Q |
49 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcag-aaaacaatactaacacctt |
137 |
Q |
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| T |
30813120 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgaaattttaaataggaaaaacaatactaacacctt |
30813209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 30813077 - 30813128
Alignment:
| Q |
19 |
ggaatgaatactaacacctcaaa-caaaagctaatattgctcttaatgttgc |
69 |
Q |
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||||||||||||||||||||||| ||||||||||| || || |||||||||| |
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| T |
30813077 |
ggaatgaatactaacacctcaaatcaaaagctaatgtttctattaatgttgc |
30813128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 18860 - 18719
Alignment:
| Q |
61 |
taatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcagaaaacaatactaacaccttcaagaaaaagttaataatgttgc |
160 |
Q |
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||||||||||||||||||| | ||||||||| ||||| ||||| |||||| ||||||||||||||||||| |||||| ||| ||||| ||||||||| |
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| T |
18860 |
taatgttgctctgctacaggagctagcaacaataacataaattgagattttaaatcagaaaacaatactatcaccttaaaggaaaag---ctaatgttgc |
18764 |
T |
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| Q |
161 |
tctgctataacagctagtaacaagaacagaaattgagatttttaa |
205 |
Q |
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||||||||| ||||||| |||| |||||||| |||||||||||| |
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| T |
18763 |
tctgctatagcagctagcaacattaacagaaactgagatttttaa |
18719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 27811659 - 27811812
Alignment:
| Q |
49 |
taatattgctcttaatgttgctctgctacagcaactagcaacattaacaaaaattaagatttgaaatcagaaaacaatactaacaccttcaagaaaaagt |
148 |
Q |
| |
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|||| |||| ||| |||||||||||||||| || ||||||||||||||| ||||| | |||| |||| | ||||||||||||||||||| ||| ||||| |
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| T |
27811659 |
taatgttgcccttcatgttgctctgctacatcagctagcaacattaacagaaattgaaattttaaataaaaaaacaatactaacaccttaaagcaaaag- |
27811757 |
T |
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| Q |
149 |
taataatgttgctctgctataacagctagtaacaagaacagaaattgagatttttaa |
205 |
Q |
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|||||||| |||||| | || |||| |||| ||| ||||||||||||||||| |
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| T |
27811758 |
--ccaatgttgcgctgctacagcacctagaaacattaacggaaattgagatttttaa |
27811812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 16775084 - 16775034
Alignment:
| Q |
220 |
tagaatgaatggtattagatagatatgtgatgaaatctacctgactgaatc |
270 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
16775084 |
tagaatgaatggtgttagatagatatgtgatggaatctacctgactgaatc |
16775034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 9631341 - 9631285
Alignment:
| Q |
217 |
ggatagaatgaatggtattagatagatatgtgatgaaatctacctgactgaatcgtg |
273 |
Q |
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||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||| |
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| T |
9631341 |
ggatagaatgaatagtgttagatagatatgtgatggaatctaccttactgaatcgtg |
9631285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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