View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_low_4 (Length: 476)
Name: NF14185_low_4
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 11184843 - 11184394
Alignment:
| Q |
1 |
gactggaaaaggaaaacacgtgcaattctatactgaacatatacattgactcatcatgtctttatgttgtatatgcaggtgagttactgtgtccttttcc |
100 |
Q |
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| T |
11184843 |
gactggaaaaggaaaacacgtgcaattctatactgaacatatacattgactcatcatgtctttatgttgtatatgcaggtgagttactgtgtccttttcc |
11184744 |
T |
|
| Q |
101 |
ttcattgtaaagtatggtacataagaagtaaacattcagaaatagcatgctccctttgcaaatcaatcaaattgctttagcatagaatggttggtaccaa |
200 |
Q |
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| T |
11184743 |
ttcattgtaaagtatggtacataagaagtaaacattcagaaatagcatgctccctttgcaaatcaatcaaattgctttagcataggatagttggtaccaa |
11184644 |
T |
|
| Q |
201 |
tataaaaacgaaactgatttattgaagtttgcacctttgttcagaagaatagttggtacttttctctttttcagtgatccttttctcttttctaagcact |
300 |
Q |
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| T |
11184643 |
tataaaaacgaaactgatttattgaagtttgcacctttgttcagaagaatagttggtacttttctctttttcagagat-cttttctcttttctaagcact |
11184545 |
T |
|
| Q |
301 |
aaccttcaatgacattcttatcatgaagaatcaatataagctaaatcgtgcgattaataggcattataaataaagaagtaaatgcatgtttgatactgcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11184544 |
aaccttcaatgacattcttatcatgaagaatcaatataagctaaatcgtgcgattaataggcattataaataaagaagtaaatgcatgtttggtactgcg |
11184445 |
T |
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| Q |
401 |
gtggattgtgagaatcatggcaagaagaacgaacaccatgatatttgttta |
451 |
Q |
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| T |
11184444 |
gtggattctgagaatcatggcaagaagaacgaacatcacgacatttgttta |
11184394 |
T |
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