View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_low_6 (Length: 332)
Name: NF14185_low_6
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 45583789 - 45584113
Alignment:
| Q |
1 |
aacaactgagttagtaattaccaaggcacaataaatnnnnnnntaagtaccaaattgaacccttttttccttttcgaaagaggtattcttccccgattta |
100 |
Q |
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| T |
45583789 |
aacaactgagttagcaattaccaagtcacaataaata-------aaaaatcaaattgaacccttttttacttttcgaaaggggtattcttccccgattta |
45583881 |
T |
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| Q |
101 |
aattttaaagacctcccagttatgaattttttacaaagtctttttcttcaaaattatcctgtctcttgcacagttatcgattctcaaaatgttggaattt |
200 |
Q |
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| T |
45583882 |
aattttaaagacctcccagttatgaattttttacaaagtctttttcttcaaaattatcctgtctcttgcacagttatcgattctcaaaatgttggaattt |
45583981 |
T |
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| Q |
201 |
atgtggcaagcatagtattcatttgatgactcgagggaacttaaatctctttgataatacaagaattggttcgttaaaaattcaacacagtacttatgca |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45583982 |
atgtggcaagcacagtattcatttgatgactcgagggaacttaaatctttttgataatacaagaattggttcgttaaaaattcaacacagtacttatgca |
45584081 |
T |
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| Q |
301 |
tgcatgtgaacaaaggttgaatcacataattc |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45584082 |
tgcatgtgaacaaaggttgaatcacataattc |
45584113 |
T |
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