View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14185_low_8 (Length: 316)
Name: NF14185_low_8
Description: NF14185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14185_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 42959927 - 42960225
Alignment:
| Q |
1 |
gacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgata |
100 |
Q |
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| T |
42959927 |
gacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgata |
42960026 |
T |
|
| Q |
101 |
accttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggta |
200 |
Q |
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| T |
42960027 |
accttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggta |
42960126 |
T |
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| Q |
201 |
taaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactt |
299 |
Q |
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| T |
42960127 |
taaggttgatattagccttcacagtgttgttaagaagttgttctgtagtttgtttttcacacaaagtgagatttgtgaagtgctgtgactggacaactt |
42960225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 5504807 - 5504586
Alignment:
| Q |
2 |
acagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgttaacaccaagaaccttatgatccgaatcgataa |
101 |
Q |
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| T |
5504807 |
acagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgtcaacgtcaagaaccttataatcagggctaacta |
5504708 |
T |
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| Q |
102 |
ccttccctacatggcatccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttctagtgattctgtatcattgacatgctttggtat |
201 |
Q |
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| T |
5504707 |
cctttcccacatgacatccaccatggtaatgccaaattgtgatgacagtgtctttgcagaactgctctagggaagatgtgtcattggcatgttttggtat |
5504608 |
T |
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| Q |
202 |
aaggttgatattagccttcaca |
223 |
Q |
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| T |
5504607 |
gaagttgacagtagtcttcaca |
5504586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 3094314 - 3094265
Alignment:
| Q |
119 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
168 |
Q |
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| T |
3094314 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
3094265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 3085468 - 3085419
Alignment:
| Q |
119 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
168 |
Q |
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| T |
3085468 |
ccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttc |
3085419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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