View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14186_high_2 (Length: 478)

Name: NF14186_high_2
Description: NF14186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14186_high_2
NF14186_high_2
[»] chr5 (16 HSPs)
chr5 (1-467)||(5505707-5506173)
chr5 (118-452)||(28678505-28678840)
chr5 (120-462)||(759763-760104)
chr5 (118-462)||(28704489-28704834)
chr5 (224-467)||(30490319-30490562)
chr5 (120-462)||(17343531-17343878)
chr5 (224-446)||(26506682-26506910)
chr5 (1-95)||(30490785-30490879)
chr5 (1-95)||(762342-762436)
chr5 (1-95)||(34016657-34016751)
chr5 (249-301)||(20884568-20884620)
chr5 (3-95)||(20886942-20887034)
chr5 (1-95)||(29961150-29961244)
chr5 (7-82)||(14218606-14218681)
chr5 (391-462)||(20884378-20884449)
chr5 (1-82)||(15234371-15234452)
[»] chr4 (12 HSPs)
chr4 (120-462)||(55527036-55527378)
chr4 (120-462)||(34234586-34234926)
chr4 (153-462)||(24973302-24973611)
chr4 (1-95)||(36499830-36499924)
chr4 (2-95)||(55524733-55524826)
chr4 (4-95)||(50335481-50335572)
chr4 (391-462)||(50007414-50007485)
chr4 (4-90)||(41419653-41419739)
chr4 (224-306)||(41784108-41784190)
chr4 (395-462)||(50335180-50335247)
chr4 (246-301)||(50335369-50335423)
chr4 (4-82)||(18772975-18773053)
[»] chr2 (14 HSPs)
chr2 (120-462)||(8273848-8274190)
chr2 (120-462)||(26225238-26225586)
chr2 (135-454)||(35003470-35003803)
chr2 (1-95)||(8276434-8276528)
chr2 (1-95)||(11574593-11574687)
chr2 (224-416)||(14330129-14330327)
chr2 (1-95)||(35001209-35001303)
chr2 (120-301)||(22729128-22729309)
chr2 (4-90)||(9828651-9828737)
chr2 (391-462)||(22728936-22729007)
chr2 (249-301)||(9827981-9828033)
chr2 (393-462)||(9827782-9827851)
chr2 (4-82)||(19988445-19988523)
chr2 (5-79)||(10325157-10325231)
[»] chr7 (14 HSPs)
chr7 (120-462)||(4304-4646)
chr7 (120-462)||(19363312-19363654)
chr7 (120-462)||(38386787-38387130)
chr7 (272-462)||(38048246-38048436)
chr7 (1-77)||(2368924-2369000)
chr7 (8-95)||(11357085-11357172)
chr7 (249-301)||(44225166-44225218)
chr7 (4-95)||(23942083-23942174)
chr7 (391-462)||(44225336-44225407)
chr7 (224-306)||(24503217-24503299)
chr7 (405-462)||(2368860-2368917)
chr7 (345-408)||(12868889-12868952)
chr7 (1-82)||(13069764-13069845)
chr7 (35-95)||(12169869-12169929)
[»] chr8 (14 HSPs)
chr8 (120-462)||(5966407-5966749)
chr8 (120-462)||(34278716-34279058)
chr8 (1-95)||(34277174-34277268)
chr8 (4-95)||(22674687-22674778)
chr8 (225-413)||(15893604-15893798)
chr8 (258-301)||(5016738-5016781)
chr8 (1-95)||(15896072-15896166)
chr8 (392-462)||(5016549-5016619)
chr8 (249-299)||(24619688-24619738)
chr8 (1-82)||(13867775-13867856)
chr8 (3-60)||(24621618-24621675)
chr8 (249-298)||(32075689-32075738)
chr8 (224-299)||(30944116-30944192)
chr8 (55-95)||(13782038-13782078)
[»] chr1 (15 HSPs)
chr1 (120-462)||(28475356-28475698)
chr1 (224-462)||(33402000-33402238)
chr1 (236-462)||(33618426-33618653)
chr1 (224-446)||(7318927-7319155)
chr1 (337-462)||(48026470-48026595)
chr1 (1-95)||(35564358-35564452)
chr1 (1-62)||(33618676-33618737)
chr1 (4-95)||(12064320-12064411)
chr1 (249-301)||(12066769-12066821)
chr1 (1-63)||(33402254-33402315)
chr1 (391-462)||(12066929-12067000)
chr1 (4-85)||(16314450-16314531)
chr1 (409-462)||(30704177-30704230)
chr1 (1-58)||(7331184-7331241)
chr1 (167-203)||(12066687-12066723)
[»] chr6 (9 HSPs)
chr6 (120-467)||(32275068-32275415)
chr6 (120-462)||(31484250-31484593)
chr6 (120-462)||(12704430-12704772)
chr6 (120-462)||(4319697-4320038)
chr6 (120-206)||(31517275-31517361)
chr6 (1-95)||(31519605-31519699)
chr6 (249-301)||(1030423-1030475)
chr6 (391-462)||(1030593-1030664)
chr6 (1-95)||(13542922-13543016)
[»] chr3 (25 HSPs)
chr3 (120-462)||(35068420-35068762)
chr3 (120-462)||(39646373-39646715)
chr3 (120-441)||(19871310-19871631)
chr3 (276-462)||(34084695-34084876)
chr3 (1-95)||(39648961-39649055)
chr3 (1-95)||(35996464-35996558)
chr3 (1-94)||(19867738-19867831)
chr3 (1-95)||(15041219-15041312)
chr3 (1-95)||(34085823-34085917)
chr3 (224-446)||(27933537-27933757)
chr3 (1-95)||(35063927-35064021)
chr3 (4-95)||(20517340-20517431)
chr3 (4-95)||(11917701-11917792)
chr3 (249-301)||(30930674-30930726)
chr3 (249-301)||(14439896-14439948)
chr3 (249-301)||(20514934-20514986)
chr3 (391-462)||(20514738-20514809)
chr3 (250-301)||(54335950-54336001)
chr3 (354-416)||(30530692-30530754)
chr3 (391-462)||(30930485-30930556)
chr3 (12-95)||(30933083-30933166)
chr3 (391-464)||(54336116-54336189)
chr3 (391-452)||(14439718-14439778)
chr3 (1-82)||(30529258-30529339)
chr3 (167-203)||(14439994-14440030)
[»] scaffold0700 (2 HSPs)
scaffold0700 (120-462)||(4111-4451)
scaffold0700 (3-95)||(479-571)
[»] scaffold0599 (1 HSPs)
scaffold0599 (4-95)||(9452-9543)
[»] scaffold1050 (1 HSPs)
scaffold1050 (4-90)||(2832-2918)
[»] scaffold0015 (1 HSPs)
scaffold0015 (391-462)||(32490-32561)


Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 5505707 - 5506173
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttgnnnnn 100  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  5505707 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttgaaaaa 5505806  T
Q  101 nnccacaagaatggatgattttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcg 200  Q
       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||     
T  5505807 aaacacaagaatggatgattttcttcatgtgaagttgaaagaaaattgtccgctaccatctccttctaaggagtggatgactcacaagattggtgtggca 5505906  T
Q  201 gagcaatggcnnnnnnnnnnnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatc 300  Q
    ||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5505907 gagcaatggcttttttagtttttggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatc 5506006  T
Q  301 ctattaatttggacactcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatg 400  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5506007 ctattaatttggacactcctgaaaatccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatg 5506106  T
Q  401 acatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatattttcttgg 467  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5506107 acatttttgggtcggtcggtgttcgtcatattttttggtggtattagaccccgacatatttttttgg 5506173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 118 - 452
Target Start/End: Complemental strand, 28678840 - 28678505
Alignment:
Q  118 attttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnn 217  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |           
T  28678840 atttttttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcggagcaatgacttttttc 28678741  T
Q  218 nnnnnn-ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacac 316  Q
           ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28678740 agtttttggatagacaagccgccttcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacac 28678641  T
Q  317 tcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggt 416  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||    
T  28678640 tccggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcaatagtctagttagataggttatgacacttttgggtcggt 28678541  T
Q  417 cgatgttcgtcatattttttggtggtattagacccc 452  Q
    || |||||||| |||||||||||||||||| |||||    
T  28678540 cggtgttcgtcctattttttggtggtattacacccc 28678505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 760104 - 759763
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||             
T  760104 tttcttcatgtgaagttgaaagaaaattgtccactaccacctccttctaaggagtggatgactcacaagattggtgtggcggagcaatggctttttcagt 760005  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  760004 ttttggatagacaagccgccttcgatgagctcatgtctaaggagccgatgctgccaaagaaaacaacaaatgagcacaatc-tattaatttggacactcc 759906  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| ||||     
T  759905 ggaaaagccaaagcaagatatcgaagtcatggttgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcagtcgg 759806  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  759805 tgttcgtcctattttttggtggtattacaccccaacatatttt 759763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 118 - 462
Target Start/End: Complemental strand, 28704834 - 28704489
Alignment:
Q  118 attttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnn 217  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| |           
T  28704834 attttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtgtatgactcacaagattggtgtggcggagcaatgacttttttt 28704735  T
Q  218 nnnnnn-ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacac 316  Q
           ||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28704734 agtttttggatagacatgccgccttcgatgagctcatgtctaaggaaccgatgccgcccaagaaaccaacaaatgagcacaatcctattaatttggacac 28704635  T
Q  317 tcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggt 416  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||| |||||||    
T  28704634 ttcggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcaatagtctagttagataggttatgacacttttgggtcggt 28704535  T
Q  417 cgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    || |||||||| |||||||||||||||||| |||||||||| ||||    
T  28704534 cggtgttcgtcctattttttggtggtattacaccccgacatttttt 28704489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 224 - 467
Target Start/End: Complemental strand, 30490562 - 30490319
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcctgaa 323  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30490562 ggatagacaagccgccttcgatgagctcatgtctaaggatccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactccggaa 30490463  T
Q  324 aagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcgatgtt 423  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| || | ||||||||| ||||    
T  30490462 aagccaaagcaagagatcgaagtcatggatgaatacgaagaatatgcactatcactagtctagttagatatgttatgacacttctgggtcggtcggtgtt 30490363  T
Q  424 cgtcatattttttggtggtattagaccccgacatattttcttgg 467  Q
    |||||| ||||||| |||||||| ||||||| ||||||| ||||    
T  30490362 cgtcattttttttgttggtattacaccccgaaatatttttttgg 30490319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 17343531 - 17343878
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||||||||   |||||||||| ||| |||| ||||| |||||| ||||||| |||||| || ||||||||||| ||||||| |||| |             
T  17343531 tttcttcatgttttgttgaaagaagattctctgttaccacctccttgtaaggagaggatgaatcacaagattggtgaggcggagaaatgacattttgagt 17343630  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggac----- 314  Q
        ||||||| ||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||         
T  17343631 ttatggatagacaagccgccttcaatgagctcatgtctaaggagccgaagccgccaaagaaaccaacaaatgagcacaatcctattacttgtgacactcc 17343730  T
Q  315 -actcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtc 413  Q
     ||||| |||||||||||||||||  ||||||||||| ||||||| |  || |||||| ||||||||| |||||||| |||||||||||| |||| | ||    
T  17343731 gactccggaaaagccaaagcaagatttcgaagtcatgtatgaagatgttgattatgcactatcactagcctagttagctaggttatgacactttttgatc 17343830  T
Q  414 ggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||| |||||||| |||||||| ||||||||| |||||||| ||||||    
T  17343831 ggtcggtgttcgtcctatttttt-gtggtattacaccccgacgtatttt 17343878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 224 - 446
Target Start/End: Complemental strand, 26506910 - 26506682
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacac------t 317  Q
    ||||||| ||| ||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   |  |||||      |    
T  26506910 ggatagacaagacgccttcaatgacctcatgtctaaggagccgaagccgccaaagaaaccaacaaatgagcacaatcctattttgtgtgacaccccgact 26506811  T
Q  318 cctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtc 417  Q
    || ||||| |||||||||||  |||||||||||||||||||||  || | |||| ||||||||||||||||||||||||||||||| |||| |||  |||    
T  26506810 ccggaaaaaccaaagcaagatttcgaagtcatggatgaagacgttgattgtgcactatcactagtctagttagataggttatgacactttttggttcgtc 26506711  T
Q  418 gatgttcgtcatattttttggtggtatta 446  Q
    | |||||||| ||||||||||||||||||    
T  26506710 ggtgttcgtcctattttttggtggtatta 26506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30490879 - 30490785
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30490879 tgaatacaagccacataagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaactgtccgtttaggttgaaatgtttctttg 30490785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 762436 - 762342
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  762436 tgaatacaagccacttaagacgaggaagaaaccgaagcttgaaggcacgagctcaaggaagtgtaattgtctgtttaggttgaaatgtttctttg 762342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34016751 - 34016657
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  34016751 tgaatacaagccacctaagacgaggaagaagccgaagcttgaaggcacgagctcaaggaagtgtaattgtccgtttaggttgaaatgcttctttg 34016657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 20884620 - 20884568
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  20884620 ctcatgtccaaggagccgatgccgccgaagaaaccaacaaatgagcacaatcc 20884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 20887034 - 20886942
Alignment:
Q  3 aatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||| ||||| ||||| ||| |||||| ||| ||||||||||  ||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  20887034 aatacaaaccacctaagacaaggaagaaactgaaccttgaaggcattggctcaaggaaatgtaattgtccatttaggttgaaaggtttttttg 20886942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29961244 - 29961150
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||| || ||||||| ||||||||||||||| ||  | ||| || |||||||| || |||||||||    
T  29961244 tgaatacaagccacctaagacgaggaagaaaccaaaccttgaagacacgggctcaaggaaatgggaatgttcgcttaggttgcaaggtttctttg 29961150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 14218681 - 14218606
Alignment:
Q  7 caagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    ||||||| | || |||||| |||||||||||||||||||||||||||||||||| ||| |||| | | ||||||||    
T  14218681 caagccagcaaatacgaggaagaaaccgaagcttgaaggcacgggctcaaggaaatgtgattgactgcttaggttg 14218606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 20884449 - 20884378
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||| || ||||||||||| |||||||| |||||||||||||||||| | |||||| ||||||    
T  20884449 ataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacatcccgacgtatttt 20884378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15234452 - 15234371
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    ||||||||| | ||| ||||||||| ||||||| || |||||| ||| |||||||||||| ||| | |||||||||| ||||    
T  15234452 tgaatacaaacgacctaagacgaggaagaaaccaaaccttgaatgcatgggctcaaggaaatgtgaatgtccgtttatgttg 15234371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 55527036 - 55527378
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||             
T  55527036 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcggagcaatggctttttcagt 55527135  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55527136 ttttggatagacaagccgccttcgatgagctcatgtctaaggagccgatgccgccaaataaaccaacaaatgagcacaatcctattaatttggacactcc 55527235  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||     
T  55527236 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcgg 55527335  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  55527336 tgttcgtcctattttttggtggtattacaccccgacatatttt 55527378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 34234926 - 34234586
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||             
T  34234926 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgaggcggagcaatggctttttcaat 34234827  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        | ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  34234826 ttttgtatagacaagccgccttcgatgagctcatgtctaaggagccgatgtcgccaaagaaaccaacaaa-gagcacaatcctattaatttggatactcc 34234728  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
      ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||||     
T  34234727 aaaaaagccaaagcaagagatcgaaatcatggatgaagacgaagaatatgcactatcactagtctagttatataggttatgacacttttgggtcggtcgg 34234628  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||  |||||||| |||||||||  || |||||||||||    
T  34234627 tgttcgttctatttttt-gtggtattacgcctcgacatatttt 34234586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 153 - 462
Target Start/End: Original strand, 24973302 - 24973611
Alignment:
Q  153 ctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnnnnnnggatagaaaagccgccttcgacgagctca 252  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||             ||||||| |||||  |||||| |||||||    
T  24973302 ctaccacctccttctaaggaatggatgactcacaagattggtgtggcggaacaatggctttttcagtttttggatagacaagccatcttcgatgagctca 24973401  T
Q  253 tgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcctgaaaagccaaagcaagagatcgaagtcatgga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  24973402 tgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactccgaaaaagccaaagcaagatatcgaagtcatgga 24973501  T
Q  353 tgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagacccc 452  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||| |||||    
T  24973502 tgaagatgaagaataggcactatcaatagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcatatttttttgtggtattacacccc 24973601  T
Q  453 gacatatttt 462  Q
    ||||||||||    
T  24973602 gacatatttt 24973611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36499830 - 36499924
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36499830 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtctgtttaggttgaaatgtttctttg 36499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 55524733 - 55524826
Alignment:
Q  2 gaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55524733 gaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaaatgtaattgtccgtttaggttgaaatgtttctttg 55524826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 50335572 - 50335481
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| ||||| ||| |||||||||| ||||||||||  ||| ||||||| |||||||||||||||||||||||| |||||||||    
T  50335572 atacaagccacctaagacaaggaagaaaccgaaccttgaaggcatcggcccaaggaaatgtaattgtccgtttaggttgaaaggtttctttg 50335481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 50007485 - 50007414
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  50007485 ataggttatgacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacatatttt 50007414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 41419653 - 41419739
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgttt 90  Q
    |||||||||||| ||||| ||| |||||  ||| ||||||||||  ||||||||||| |||||||||||||||||||||||| ||||    
T  41419653 atacaagccacctaagacaaggaagaaaatgaaccttgaaggcatcggctcaaggaaatgtaattgtccgtttaggttgaaaggttt 41419739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 41784108 - 41784190
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctatta 306  Q
    ||||||| ||||||||||| | || ||| ||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||    
T  41784108 ggatagacaagccgccttcaatgacctcgtgtctaaggagccgaagccgccaaagaaaccaacaaatgagtataatccaatta 41784190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 50335247 - 50335180
Alignment:
Q  395 gttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||| |||| || ||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  50335247 gttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtatttt 50335180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 50335423 - 50335369
Alignment:
Q  246 gagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  50335423 gagctcatgtccaaggagctgatgccgccaaagaaaccaac-aatgagcacaatcc 50335369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 18772975 - 18773053
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    |||||| ||||| |||| |||| |||||| ||| |||||| ||||||||||||| || ||| |||||| ||||||||||    
T  18772975 atacaaaccaccaaagaggaggaagaaactgaatcttgaaagcacgggctcaagaaaatgtgattgtctgtttaggttg 18773053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 8274190 - 8273848
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||             
T  8274190 tttcttcatgtgaagttgaaagaaaattgtccgctaccatcttcttctaaggagtggatgactcacaagattggtgtggtggagcaatggctttttcagt 8274091  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||| | ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8274090 ttttggataaacaagccgccttcgatgagctcaagtttaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 8273991  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||    
T  8273990 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtttagttagataggttatgacacttttgggtcggtcga 8273891  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||| ||||||||| |||||||||||||||    
T  8273890 tgttcgtcctatttttttgtggtattacaccccgacatatttt 8273848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 26225586 - 26225238
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||||||| ||||||||||||| ||||| |||||||| |||||| |||| |||||||||||| |||||||| || || |||| ||||||             
T  26225586 tttcttcatgcgaagttgaaagaagattgtgtgctaccacctccttgtaagaagtggatgactcacaagattgatgaggtggagaaatggcattttgagt 26225487  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| |||||| |||||| || |||||||||||||||| || || ||||| ||||||||||||||||||||||||||||| ||  ||||||||    
T  26225486 ttatggatagacaagccgtcttcgatgatctcatgtctaaggagctgaagctgccaaggaaaccaacaaatgagcacaatcctattacttatgacactcc 26225387  T
Q  320 tg------aaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtc 413  Q
            ||||  | ||||||||  ||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||||||||| |||| ||||    
T  26225386 aactccgaaaaaatcgaagcaagatttcgaagtcatggatgaagacgaagattatgcactatcactagtctaggtagatacgttatgacacttttgggtc 26225287  T
Q  414 ggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||| |||||||| |||||||| ||||||||| |||||||||||||||    
T  26225286 ggtcggtgttcgtcctatttttttgtggtattacaccccgacatatttt 26225238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 135 - 454
Target Start/End: Original strand, 35003470 - 35003803
Alignment:
Q  135 ttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnnnnnnggatagaaaag 234  Q
    ||||||||| |||||||| ||||| |||||| ||||||||||||||    ||||||||||| ||| ||| ||||||             ||||||| |||    
T  35003470 ttgaaagaagattgtctgttaccacctccttgtaaggagtggatgaacaacaagattggtgaggcagagaaatggcattttgagtttatggatagacaag 35003569  T
Q  235 ccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggac------actcctgaaaagcc 328  Q
    | |||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||  |||      ||||| ||||||||    
T  35003570 ctgccttcgatgagctcatgtctaaggagccgaagccgccaaaaaaaccaacaaatgagcacaatcctattatttgtgacaatccaactccggaaaagcc 35003669  T
Q  329 aaagcaagagatcgaagtcatggatgaa---------gacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
    |||||||||  || ||||||||||||||         || |  || |||||| ||||| ||| |||||||||||||||||| || ||||||||| ||||     
T  35003670 aaagcaagatttctaagtcatggatgaagatgttgatgatgttgattatgcactatcaatagcctagttagataggttatgtcacttttaggtc-gtcgg 35003768  T
Q  420 tgttcgtcatattttttggtggtattagaccccga 454  Q
    |||||||| |||||| ||||||||||| |||||||    
T  35003769 tgttcgtcctattttctggtggtattacaccccga 35003803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8276528 - 8276434
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8276528 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgcttctttg 8276434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11574593 - 11574687
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  11574593 tgaatacaagccacctaagatgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccatttaggttgaaatatttctttg 11574687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 416
Target Start/End: Complemental strand, 14330327 - 14330129
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcct--- 320  Q
    ||||||| ||||| ||||| | || |||||||||||||||||||  |||||||| ||||||||||||||||||||  | |||| ||  ||||||||        
T  14330327 ggatagacaagccaccttcaatgacctcatgtctaaggagccgaatccgccaaataaaccaacaaatgagcacaagtcaattatttgtgacactcccact 14330228  T
Q  321 ---gaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggt 416  Q
       ||||| ||||| |||||  ||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||| |||||||| |||| |||||||    
T  14330227 ccggaaaaaccaaaacaagatttcgaagtcatggaagaagacggagattatgcactatcactagtctagttagatagattatgacagtttttggtcggt 14330129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35001209 - 35001303
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||    
T  35001209 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcatgggctcaaggaaatgtaattttccgtttaggttgaaatgcttctttg 35001303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 120 - 301
Target Start/End: Complemental strand, 22729309 - 22729128
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||| ||||||||||||||||| |||||||| ||||| |||||| ||||| ||||||||||| |||||||||||  | |||| ||||||             
T  22729309 tttcttgatgtgaagttgaaagaagattgtctgttaccacctccttgtaaggtgtggatgactcacaagattggtgacgaggagaaatggcattttgagt 22729210  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
        ||| ||| ||||||||||||| |||||| ||||||||||||| | ||| |||||||| ||||||||||||||||||||    
T  22729209 ttatggacagacaagccgccttcgatgagctcgtgtctaaggagccaaagccaccaaagaacccaacaaatgagcacaatcc 22729128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 9828737 - 9828651
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgttt 90  Q
    |||||||||||| ||||||||| |||||| ||| |||||||| |  ||||||||||| |||||||||||||||||||||||||||||    
T  9828737 atacaagccacctaagacgaggaagaaactgaaccttgaagggattggctcaaggaaatgtaattgtccgtttaggttgaaatgttt 9828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 22729007 - 22728936
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  22729007 ataggttatgacacttttaggtcgatcggtgttcgtcctattttttggtggtattacaccccgacgtatttt 22728936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 9828033 - 9827981
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||||    
T  9828033 ctcatgtccaaggagccaaagccgccaaagaaaccaacaaatgagcacaatcc 9827981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 9827851 - 9827782
Alignment:
Q  393 aggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||| |||| || ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||||    
T  9827851 aggttaggacacttataggtcggtcggtgttcgtcttatttttttgtggtattacaccccgacgtatttt 9827782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 19988445 - 19988523
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    |||||| ||||| |||| |||| ||||   ||| ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  19988445 atacaaaccaccaaagaggaggaagaagttgaatcttgaaggcacaggctcaaggaaatgtgattgtccgtttaggttg 19988523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 10325231 - 10325157
Alignment:
Q  5 tacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttagg 79  Q
    ||||| ||||| ||| ||| | |||||  |||||||||||||| | |||||||||| ||| ||||||||||||||    
T  10325231 tacaaaccaccaaaggcgaagtagaaattgaagcttgaaggcatgagctcaaggaaatgtgattgtccgtttagg 10325157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 4304 - 4646
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||             
T  4304 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcggaccaatggctttttcagt 4403  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| |||||  ||| || |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  4404 ttttggatagacaagccatctttgatgagctcatatctaaggagccgatgccgccaaagaaaccaacaattgagcaaaatcctattaatttggacactcc 4503  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||     
T  4504 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttagatcggtcgg 4603  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  4604 tgttcgtcatattttttggtggtattacaccccgacatatttt 4646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 19363312 - 19363654
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||             
T  19363312 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgaggcggagcaatggcttttccagt 19363411  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  19363412 ttttggatagacaagccgccttcgatgagctcatgtctaaggagccaatgctgccaaagaaaccatcaaataagcacaatcctattaatttggacactcc 19363511  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | ||| ||||    
T  19363512 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttggatcgatcga 19363611  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  19363612 tgttcgtcatatattttagtggtattacaccccgacatatttt 19363654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 38387130 - 38386787
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |             
T  38387130 tttcttcatgtaaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcagagcaatgacttttttcag 38387031  T
Q  220 nnnn-ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactc 318  Q
         ||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38387030 tttttggatagacaagccgccttcgatgagttcatgtctaaggagccgatgtcgccaaagaaaccaacaaatgagcacaatcctattaatttggacactc 38386931  T
Q  319 ctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcg 418  Q
    | ||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | |||||||    
T  38386930 cggaaaagccaaagcaagatatcaaagtcatggattaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttggatcggtcg 38386831  T
Q  419 atgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
     ||||||||||||||||||||||||||| |||||||||||||||    
T  38386830 gtgttcgtcatattttttggtggtattacaccccgacatatttt 38386787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 272 - 462
Target Start/End: Complemental strand, 38048436 - 38048246
Alignment:
Q  272 gccaaagaaaccaacaaatgagcacaatcctattaatttggacactcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgca 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  38048436 gccaaagaaaccaacaaatgagcacaatcctattaatttggacactccggaaaaggcaaagtcagagatcgaagtcatggatgaagacgaagaatatgca 38048337  T
Q  372 ttatcactagtctagttagataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
     ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  38048336 ctatcactagtctagttagataggttatgacacttttgggtcggtcggtgttcgtcatattttttggtggtattacaccccgacatatttt 38048246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2369000 - 2368924
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgttta 77  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| | | ||||||||||||    
T  2369000 tgaatacaagccacctaagacgaggaagaaaccaaagcttgaaggcacgggctcaaggaaatttgattgtccgttta 2368924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 11357085 - 11357172
Alignment:
Q  8 aagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||| ||||| ||| |||||||||| ||||||||||  ||||||| ||| |||||||||||||||||||||||| |||||||||    
T  11357085 aagccacctaagacaaggaagaaaccgaaccttgaaggcatcggctcaatgaaatgtaattgtccgtttaggttgaaaggtttctttg 11357172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 44225166 - 44225218
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  44225166 ctcatgtccaaggagctgatgccgccaaagaaaccaacaaatgagcacaatcc 44225218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 23942083 - 23942174
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| ||||| ||| |||| | ||| ||||||||||   |||||||||| |||||||||| ||||||||||||| |||||||||    
T  23942083 atacaagccacctaagacaaggaagaagctgaaccttgaaggcatcagctcaaggaaatgtaattgtctgtttaggttgaaaggtttctttg 23942174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 44225336 - 44225407
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||| || ||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  44225336 ataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtatttt 44225407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 24503217 - 24503299
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctatta 306  Q
    ||||||| ||| ||| ||| | || |||||||| |||||| ||  ||||||||||||||||||||||||||||||||| ||||    
T  24503217 ggatagacaagacgcattcaatgaactcatgtccaaggagtcgtagccgccaaagaaaccaacaaatgagcacaatccaatta 24503299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 2368917 - 2368860
Alignment:
Q  405 ttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||| ||||||||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  2368917 tttttggtcggtcggtgttcgtcctattttttggtggtattacaccccgacgtatttt 2368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 12868889 - 12868952
Alignment:
Q  345 gtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacattttt 408  Q
    |||||||| ||||||||||| |||||  ||||||||  ||||||||||||| ||||||||||||    
T  12868889 gtcatggaagaagacgaagattatgctctatcactaagctagttagataggctatgacattttt 12868952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13069845 - 13069764
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    ||||||||| ||||| |||| |||| |||||||||| |||||||||||| |  ||| ||| ||| | |||||||||||||||    
T  13069845 tgaatacaaaccacctaagatgaggaagaaaccgaaccttgaaggcacgtgaacaatgaaatgtgaatgtccgtttaggttg 13069764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 12169929 - 12169869
Alignment:
Q  35 aagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||||| ||||||||||| ||| | |||| ||||||||| ||||| |||||||    
T  12169929 aagcttgaaggcacaggctcaaggaaatgtgaatgtctgtttaggtttaaatgcttctttg 12169869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 5966407 - 5966749
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||             
T  5966407 tttcttcatgtgaagttgaaagaaaattgttcgctaccacctccttctaaggagtggatgactcacaagattggtgtggcggagcaatggctttttcagt 5966506  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  5966507 ttttggatagacaagccgccttcgatgagctcatgtctacggagccgatgtcgcccaagaaaccaacaaatgagcacaatcctattaatttgtacactcc 5966606  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||     
T  5966607 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcgg 5966706  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||| ||||||||| ||| |||||||||||    
T  5966707 tgttcgtcctatttttttgtggtattacacctcgacatatttt 5966749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 34278716 - 34279058
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||  |||||||||||||| ||||||||| |             
T  34278716 tttcttcatgtgaagttgaaagcaaattgtccgctaccacctccttctaaggagtggatgactgacaagattggtgtggtggagcaatgactttttcagt 34278815  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34278816 ttttggatagacaagccgccttcgatgagctcatgtttaaggagctgatgccgccaaagaaaccaacaaatgaacacaatcctattaatttggacactcc 34278915  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| |||| | ||| |||     
T  34278916 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactattttagttagataggttatgacacttttggatcgatcgg 34279015  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  34279016 tgttcgtcttattttttggtggtattacaccccgacatatttt 34279058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 34277174 - 34277268
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34277174 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaagtcacgggctcaaggaaatgtaattgtccgtttaggttgaaatgtttctttg 34277268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 22674687 - 22674778
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||   |||||||||| |||||||||||||||||||||||| |||||||||    
T  22674687 atacaagccacctaagacgaggaagaaaccgaaccttgaaggcatcagctcaaggaaatgtaattgtccgtttaggttgaaaagtttctttg 22674778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 413
Target Start/End: Complemental strand, 15893798 - 15893604
Alignment:
Q  225 gatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc----- 319  Q
    |||||| ||||||||||| |||| |||||||||||||||| || ||||||||||||  ||||||||||||||||||| |||| ||  ||||||||         
T  15893798 gatagagaagccgccttcaacgacctcatgtctaaggagctgaagccgccaaagaacacaacaaatgagcacaatccaattatttgtgacactcccacta 15893699  T
Q  320 -tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtc 413  Q
      ||||| | ||| ||| |  ||||| ||||||| ||| || |||| |||||  |||||||||||||||||||||||| | |||| |||| ||||    
T  15893698 tggaaaaacaaaaacaataattcgaattcatggaagaaaacaaagattatgccatatcactagtctagttagataggtgaagacactttttggtc 15893604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 5016781 - 5016738
Alignment:
Q  258 aaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  5016781 aaggagccgaagccgccaaagaaaccaacaaatgagcacaatcc 5016738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15896166 - 15896072
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||| ||||| |||| |||| ||||||| || |||||||||||  |||||||||| ||| | |||||||||||||||   ||||||||||    
T  15896166 tgaatacaaaccacctaagatgaggaagaaaccaaaccttgaaggcacatgctcaaggaaatgtgaatgtccgtttaggttgcgttgtttctttg 15896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 5016619 - 5016549
Alignment:
Q  392 taggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||| ||| |||| ||||||    
T  5016619 taggttaggacacttataggtcggtcggtgttcgtcttatttttttgtggtattacacctcgacgtatttt 5016549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 24619738 - 24619688
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaat 299  Q
    ||||||| ||||||| ||| |||||||||||||||||| ||||||||||||    
T  24619738 ctcatgtataaggaggcgaagccgccaaagaaaccaactaatgagcacaat 24619688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13867856 - 13867775
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    ||||||||| ||||| |||| |||| ||||||| || ||| ||||||||||||||||||| ||| | |||  ||||||||||    
T  13867856 tgaatacaaaccaccaaagatgaggaagaaaccaaaccttcaaggcacgggctcaaggaaatgtgaatgtttgtttaggttg 13867775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 24621675 - 24621618
Alignment:
Q  3 aatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaa 60  Q
    ||||||||||||| || |||||| ||||| |||| |||||||||| ||||||||||||    
T  24621675 aatacaagccacctaatacgaggaagaaatcgaaccttgaaggcatgggctcaaggaa 24621618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 32075689 - 32075738
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaa 298  Q
    |||||||| ||||||| || ||||||||| ||||||||||||||||||||    
T  32075689 ctcatgtccaaggagctgaagccgccaaacaaaccaacaaatgagcacaa 32075738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 30944116 - 30944192
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaa-ccaacaaatgagcacaat 299  Q
    ||||||| ||||||||||| | || ||| ||||||||||||||| ||||| ||| ||| |||||||||||| |||||    
T  30944116 ggatagacaagccgccttcaatgacctcgtgtctaaggagccgaagccgctaaacaaacccaacaaatgagtacaat 30944192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 13782078 - 13782038
Alignment:
Q  55 aaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  13782078 aaggaaatgtaattgtccgtttaggttgaaaggtttatttg 13782038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 28475698 - 28475356
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||||||||||             
T  28475698 tttcttcatgtgaagttgaaagaaaattgtctgctactacctccttctaaggagtggatgactcacaagattggtgaggcggagcaatggctttttcttt 28475599  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28475598 ttttggatagacaatccgccttcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 28475499  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||||     
T  28475498 ggaaaagccaaagcaagagatcgaagccatggatgaagatgaagaatatgcactatcgctagtctagttagataggttatgacacttttgggtcggtcgg 28475399  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||||||||||||| |||||  ||||||||    
T  28475398 tgttcgtcctattttttggtggtattacaccccatcatatttt 28475356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 224 - 462
Target Start/End: Complemental strand, 33402238 - 33402000
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcctgaa 323  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||   ||    
T  33402238 ggatagacaagccgccttcgacgagctcatgtctaaggagctgatgccgccaaacaaaccaacaaatgagcacaatcctattaatttagacactctgaaa 33402139  T
Q  324 aagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcgatgtt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  33402138 aagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcggtgtt 33402039  T
Q  424 cgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||  |||||| ||||||||| |||||||||||||||    
T  33402038 cgtcaattttttttgtggtattacaccccgacatatttt 33402000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 236 - 462
Target Start/End: Complemental strand, 33618653 - 33618426
Alignment:
Q  236 cgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcctgaaaagccaaagcaa 335  Q
    |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  33618653 cgccttcgacgatctcatgtctaaggagctgatgccgccaaacaaaccaacaaatgagcacaatcctattaatttggacactccggaaaagtcaaagcaa 33618554  T
Q  336 gagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcgatgttcgtc-atatttt 434  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||| || ||||    
T  33618553 gagatcgaagtcatggatgaagatgaagaatatgcattatcactagtctagttagataggttatgacacttttgggtcggtcagtgttcgtcaatttttt 33618454  T
Q  435 ttggtggtattagaccccgacatatttt 462  Q
    || ||||||||| |||||||||||||||    
T  33618453 tttgtggtattacaccccgacatatttt 33618426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 224 - 446
Target Start/End: Complemental strand, 7319155 - 7318927
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcct--- 320  Q
    ||||||| ||||||||||| | || ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  |  ||||||||        
T  7319155 ggatagacaagccgccttcaatgacctcatgtctaaggagccgaagccaccaaagaaaccaacaaatgagcacaatcctattatgtgtgacactccgact 7319056  T
Q  321 ---gaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtc 417  Q
       ||||| ||||||||| |  | |||||||| |||||||||   || |||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  7319055 ccggaaaaaccaaagcaaaattttgaagtcatagatgaagacattgattatgcattatcactagtctagttagataggttatgacactttttggtcggtc 7318956  T
Q  418 gatgttcgtcatattttttggtggtatta 446  Q
    | ||||||||||||||||| || ||||||    
T  7318955 ggtgttcgtcatatttttttgtagtatta 7318927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 337 - 462
Target Start/End: Original strand, 48026470 - 48026595
Alignment:
Q  337 agatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcgatgttcgtcatatttttt 436  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||| | | ||||| |||||||||||||||||    
T  48026470 agatcgaagtcatggatgaagacgaagaatacgcactatgactagtctagttagataggttatgacacttttggataggtcggtgttcgtcatatttttt 48026569  T
Q  437 ggtggtattagaccccgacatatttt 462  Q
    |||||||||| |||||||||||||||    
T  48026570 ggtggtattacaccccgacatatttt 48026595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35564452 - 35564358
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  35564452 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtctgtttcggttgaaatgtttctttg 35564358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33618737 - 33618676
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagt 62  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  33618737 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagt 33618676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 12064320 - 12064411
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| ||||| ||| |||||||||| ||||||||||  ||||||||||| ||||||||||| |||||||||||| |||| ||||    
T  12064320 atacaagccacctaagacaaggaagaaaccgaaccttgaaggcatcggctcaaggaaatgtaattgtccatttaggttgaaaggtttttttg 12064411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 12066769 - 12066821
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12066769 ctcatgtccaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 12066821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33402315 - 33402254
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtg 63  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||    
T  33402315 tgaatacaagccacctaagacgaggaagaa-ccgaagcttgaaggcacgggctcaaggaagtg 33402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 12066929 - 12067000
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| ||||||| ||||||||| | |||||||| |||||||||||||||||| |||||||| ||||||    
T  12066929 ataggttaggacatttataggtcggttggtgttcgtcctattttttggtggtattacaccccgacgtatttt 12067000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 16314531 - 16314450
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaa 85  Q
    |||||||||||| ||||| | | |||||| ||| ||||||||||   |||||||||| ||||||||||||||||||||||||    
T  16314531 atacaagccacctaagacaaagaagaaactgaaccttgaaggcatctgctcaaggaaatgtaattgtccgtttaggttgaaa 16314450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 409 - 462
Target Start/End: Complemental strand, 30704230 - 30704177
Alignment:
Q  409 aggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||||| |||||||| ||| |||||||||||||| |||||||||||||||    
T  30704230 aggtcggtcggtgttcgtcctatattttggtggtattacaccccgacatatttt 30704177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7331184 - 7331241
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaagg 58  Q
    ||||||||||||||| ||||||||  ||||||| |||||||||||||||  |||||||    
T  7331184 tgaatacaagccacctaagacgagtaagaaaccaaagcttgaaggcacgaactcaagg 7331241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 12066687 - 12066723
Alignment:
Q  167 taaggagtggatgactcgcaagattggtgtggcggag 203  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  12066687 taaggagtggatgactcacaagattggtgaggcggag 12066723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 120 - 467
Target Start/End: Complemental strand, 32275415 - 32275068
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||| |             
T  32275415 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgaggtggagcaatgactttttcagt 32275316  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
         ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32275315 ttttcgatagaaaagccgccctcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 32275216  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||| |||||     
T  32275215 ggaaaagtcaaagcaagagatcaaagtcatggatgaagacgaagaatatgcactatcactagtcttgttagataggttatgacacttttgggttggtcgg 32275116  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatattttcttgg 467  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  32275115 tgttcgttatattttttggtggtattacaccccgacatatttttttgg 32275068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 31484593 - 31484250
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||| |||             
T  31484593 tttcttcatgtgaagttgaaagaaaattgtctgctaccacctccttctaaggagtggatgactcacaagattggtgaggcagagcaagggctttttcagt 31484494  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  31484493 tttcggatagacaaaccgccttcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcataatcctattaatttcgacactcc 31484394  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||| |||||||||     
T  31484393 ggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttatgacccttttgggtcggtcgg 31484294  T
Q  420 tgttcgtcata-ttttttggtggtattagaccccgacatatttt 462  Q
    |||||||| || |||||||||||||||| ||||||| |||||||    
T  31484293 tgttcgtcctatttttttggtggtattacaccccgaaatatttt 31484250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 12704772 - 12704430
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||  ||||||||||||||||||  ||||||| |||||| ||| ||||||||||||| ||||||||||| ||||||||||||||             
T  12704772 tttcttcatgctaagttgaaagaaaattgttcgctaccacctccttttaatgagtggatgactcacaagattggtgaggcggagcaatggctttttcagt 12704673  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12704672 ttttggatagacaaaccgccttcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 12704573  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||      
T  12704572 ggaaaagccaaagcaagagatcgaagtcatggatgaagatgaagattatgcaatatcactagtctagttagataggatatgacatttttgggtcggtcag 12704473  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  12704472 tgttcgtcctattttttggtggtattacaccccgacatatttt 12704430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 4320038 - 4319697
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| |             
T  4320038 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgaggcggagcaatgactttttcagt 4319939  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  4319938 ttttggatagacaagccaccttcgatgagctcatgtctaaggagccgatgccgccaaagaagccaacaaatgagcaca-tcctattaatttggacactcc 4319840  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
      |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||||     
T  4319839 gaaaaaaccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactatcactagtctagttagataggttgtgacacttttgggtcggtcgg 4319740  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||  ||||||||||||||||| |||| ||||||||||    
T  4319739 tgttcgtccaattttttggtggtattacaccctgacatatttt 4319697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 31517361 - 31517275
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaa 206  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  31517361 tttcttcatgtgaagttgaaagaaaattgcccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcggagcaa 31517275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31519699 - 31519605
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||||||  |||||||| ||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||    
T  31519699 tgaatacaagccaccttagacgaggaagaaaccaaagcttgaaggcacgggttcaaggaagtgtaattttccgtttagattgaaatgcttctttg 31519605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 1030423 - 1030475
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1030423 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 1030475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 1030593 - 1030664
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||| || ||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||    
T  1030593 ataggttaggacacttataggtcggtcggtgttcgtcctattttttggtggtattacaccccgacttatttt 1030664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13543016 - 13542922
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| |||||  |||  ||||||||| ||||| |||||| | | | ||||||||||||||||||| ||||||||    
T  13543016 tgaatacaagccacctaagacgaggaagaaattgaattttgaaggcatgggcttaaggaaatttgaatgtccgtttaggttgaaatatttctttg 13542922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 35068420 - 35068762
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |             
T  35068420 tttcttcatgtgaagttgaatgaaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtgtggcagagcaatgactttttcagt 35068519  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  35068520 ttttggatagacaagccgccttcgatgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcttattaatttggacacttc 35068619  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  ||||||||     
T  35068620 ggaaaagccagagcaagagatcgaagtcatgaatgaagacgaagaatatgcactatcactagtctagttagataggttatgacacttttgagtcggtcgg 35068719  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||    
T  35068720 tgttcgtcatatttttttgtggtattacaccctgacatatttt 35068762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 120 - 462
Target Start/End: Complemental strand, 39646715 - 39646373
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||             
T  39646715 tttcttcatgtgaagttgaaagaaaattgttcgctaccacctccttctaaggagtggatgactcacaagattggtgaggcggagcaatggctttttcaat 39646616  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39646615 ttttggatagacaagccgccttcgatgagctcatgtctaaggagctgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 39646516  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     ||||||||||| ||||| |||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||     
T  39646515 ggaaaagccaaaacaagatatcgaagtcatggatgaagatggagattatgcactatcactagtctagttagataggttatgacacttttgggtcggtcgg 39646416  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||    
T  39646415 tgttcgtcccatttttttgtggtattacaccccgacatatttt 39646373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 120 - 441
Target Start/End: Original strand, 19871310 - 19871631
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||             
T  19871310 tttcttcatgtgaagttgaaagaaaattgtccgctaccacctccttctaaggagtggatgactcacaagatttgtgtggcggagcaatggcttttttagt 19871409  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||  |||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19871410 ttttggataggcaagccgccttggatgagctcatgtctaaggagccgatgccgccaaagtaaccaacaaatgagcacaaccctattaatttggacactcc 19871509  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||     
T  19871510 ggaaaagccaaagcaagagatcgaagtcatggatgaagaagaagaatatgcactatcactagtctagttagataggttatgacacttttgggtcggtcgg 19871609  T
Q  420 tgttcgtcatattttttggtgg 441  Q
    ||||| || |||||||| ||||    
T  19871610 tgttcatcctatttttttgtgg 19871631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 276 - 462
Target Start/End: Complemental strand, 34084876 - 34084695
Alignment:
Q  276 aagaaaccaacaaatgagcacaatcctattaatttggacactcctgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattat 375  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34084876 aagaaaccaacaaatgagcacaatcctactaatttggatactccggaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcactat 34084777  T
Q  376 cactagtctagttagataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||| ||||||||||||||||||||||||| |||||||     ||||||||||||||||||||||||| |||||||||||||||    
T  34084776 cactagtttagttagataggttatgacatttttgggtcggt-----ttcgtcatattttttggtggtattacaccccgacatatttt 34084695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 39649055 - 39648961
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39649055 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtctgtttaggttgaaatgtttctttg 39648961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35996464 - 35996558
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35996464 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcacgagctcaaggaagtgtaattgtccgtttaggttgatatgtttctttg 35996558  T

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Target: chr3; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19867738 - 19867831
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttcttt 94  Q
    |||||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19867738 tgaatacaggccacctaagacgaggaagaaaccgaagcttaaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttcttt 19867831  T

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Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 15041312 - 15041219
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15041312 tgaatacaagccacctaagacgaggaagaa-ccaaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 15041219  T

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Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34085917 - 34085823
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  34085917 tgaatacaagccacctaagacgaggaagaaaccgaagcttgaaggcatgggcacaaggaagtgtaattgtccgtttagattgaaatgtttctttg 34085823  T

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Target: chr3; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 224 - 446
Target Start/End: Original strand, 27933537 - 27933757
Alignment:
Q  224 ggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcct--- 320  Q
    ||||||| ||||||||||| | || ||||||||||||||||||| ||||| ||| ||||    |||||||||||||||||||| ||  ||||||||        
T  27933537 ggatagacaagccgccttcaatgacctcatgtctaaggagccgaagccgcaaaaaaaac----aaatgagcacaatcctattatttgtgacactccgact 27933632  T
Q  321 ---gaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtc 417  Q
       ||||| ||||| |||||  |||||||||||||||||||||  ||  ||||| ||||||||||||| |||||| | |||||||| |||| ||||||      
T  27933633 ccggaaaaaccaaaacaagatttcgaagtcatggatgaagacgttgatcatgcactatcactagtctaattagattgattatgacactttttggtcgg-- 27933730  T
Q  418 gatgttcgtcatattttttggtggtatta 446  Q
      |||||||| ||||||||||||||||||    
T  27933731 --tgttcgtcctattttttggtggtatta 27933757  T

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Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35063927 - 35064021
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||||||||| ||||||||| |||||| |||| |||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||    
T  35063927 tgaatacaagccacctaagacgaggaagaaactgaagtttgaaggcacaggctcaaggaagtgtaattgtctgtttaagttgaaatgcttctttg 35064021  T

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Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 20517431 - 20517340
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| ||||||||| ||||||| || ||||||||||  ||||||||||| |||||||||||||||||||||||| |||| ||||    
T  20517431 atacaagccacctaagacgaggaagaaaccaaaccttgaaggcatcggctcaaggaaatgtaattgtccgtttaggttgaaaggtttatttg 20517340  T

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Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 11917701 - 11917792
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| |||  |||| |||||||||| |||||| |||  ||||||||||| |||||||||||||||||||||||| |||||||||    
T  11917701 atacaagccacctaaggtgaggaagaaaccgaaccttgaacgcatcggctcaaggaaatgtaattgtccgtttaggttgaaaggtttctttg 11917792  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 30930726 - 30930674
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30930726 ctcatgtccaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 30930674  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 14439948 - 14439896
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  14439948 ctcatgtccaaggagccgatgccaccaaagaaaccaacaaatgagcacaatcc 14439896  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 20514986 - 20514934
Alignment:
Q  249 ctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  20514986 ctcatgtccaaggagccgaagccgccaaagaaaccaacaaatgagcacaatcc 20514934  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 20514809 - 20514738
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||| |||| ||||    
T  20514809 atagattatgacacttttaggtcggtcgatgttcgtcctattttttggtgatattacaccccaacatttttt 20514738  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 54335950 - 54336001
Alignment:
Q  250 tcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcc 301  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  54335950 tcatatctaaggagccgaagccgccaaagaaaccaacaaatgagcacaatcc 54336001  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 416
Target Start/End: Original strand, 30530692 - 30530754
Alignment:
Q  354 gaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggt 416  Q
    |||| |||||| |||||| ||||| ||||||||||||||||||||||||| |||| |||||||    
T  30530692 gaaggcgaagattatgcactatcattagtctagttagataggttatgacactttttggtcggt 30530754  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 30930556 - 30930485
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| |||| || ||||||||||| |||||||| |||||||| ||||||||  |||||||| ||||||    
T  30930556 ataggttaggacacttataggtcggtcggtgttcgtcctatttttttgtggtatttcaccccgacgtatttt 30930485  T

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Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 30933166 - 30933083
Alignment:
Q  12 cacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||| ||||| ||| |||||||||| ||||||| ||  || |||||||| ||||||| |||||||||||||||| |||| ||||    
T  30933166 cacctaagacaaggaagaaaccgaaccttgaagtcatcggttcaaggaaatgtaattttccgtttaggttgaaaggtttttttg 30933083  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 464
Target Start/End: Original strand, 54336116 - 54336189
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatattttct 464  Q
    ||||||||||||  |||| |||||||| ||||| ||| |||||| ||||||||||| | |||||| ||||||||    
T  54336116 ataggttatgactctttttggtcggtcaatgtttgtcctattttctggtggtattacatcccgacgtattttct 54336189  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 14439778 - 14439718
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagacccc 452  Q
    |||||||| |||| || ||||||||||| |||| ||| |||||||||||||||||| |||||    
T  14439778 ataggttaggacacttataggtcggtcggtgtt-gtcctattttttggtggtattacacccc 14439718  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30529258 - 30529339
Alignment:
Q  1 tgaatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttg 82  Q
    |||| |||| ||||| || |||||  |||||| ||| |||||||||||| |||||||||| ||| | |||| ||||||||||    
T  30529258 tgaacacaaaccacctaaaacgagaaagaaactgaaccttgaaggcacgagctcaaggaaatgtgaatgtcagtttaggttg 30529339  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 14440030 - 14439994
Alignment:
Q  167 taaggagtggatgactcgcaagattggtgtggcggag 203  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  14440030 taaggagtggatgactcacaagattggtgaggcggag 14439994  T

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Target: scaffold0700 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 462
Target Start/End: Original strand, 4111 - 4451
Alignment:
Q  120 tttcttcatgtgaagttgaaagaaaattgtctgctaccatctccttctaaggagtggatgactcgcaagattggtgtggcggagcaatggcnnnnnnnnn 219  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||             
T  4111 tttcttcatgtgaagttgaaa-aaaattgtccgctaccacctccttctaaggagtggatgactcacaagattggtggggcggagcaatggctttttgagt 4209  T
Q  220 nnnnggatagaaaagccgccttcgacgagctcatgtctaaggagccgatgccgccaaagaaaccaacaaatgagcacaatcctattaatttggacactcc 319  Q
        ||||||| ||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  4210 ttttggatagacaagccaccttcgatgagctcatgtctaaggagccgaaaccgccaaagaaaccaacaaatgagcacactcctattactttggacactcc 4309  T
Q  320 tgaaaagccaaagcaagagatcgaagtcatggatgaagacgaagaatatgcattatcactagtctagttagataggttatgacatttttaggtcggtcga 419  Q
     |||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |  ||| |||||||||     
T  4310 ggaaaagccaaagcaagagttcgaagtcatggatgaagacgaagattatgcactatcactagtctagttagataggttatga-aactttgggtcggtcgg 4408  T
Q  420 tgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    |||||||| ||||||||||| |||||| |||||||| ||||||    
T  4409 tgttcgtcctattttttggttgtattacaccccgacgtatttt 4451  T

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Target: scaffold0700; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 479 - 571
Alignment:
Q  3 aatacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||    
T  479 aatacaagctacctaagacgaggaagaaactgaagcttgaaggcacaggcacaaggaaatgtaattgtccgtttaggttgaaatgcttctttg 571  T

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Target: scaffold0599 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 9452 - 9543
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgtttctttg 95  Q
    |||||||||||| |||  |||| |||||||||| |||||| |||  ||||||||||| |||||||||||||||||||||||| |||||||||    
T  9452 atacaagccacctaaggtgaggaagaaaccgaaccttgaacgcatcggctcaaggaaatgtaattgtccgtttaggttgaaaggtttctttg 9543  T

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Target: scaffold1050 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 2832 - 2918
Alignment:
Q  4 atacaagccacccaagacgagggagaaaccgaagcttgaaggcacgggctcaaggaagtgtaattgtccgtttaggttgaaatgttt 90  Q
    |||||||||||| |||| | || |||||||||| || |||||||  ||||||||||| ||||||||||| |||||||||||| ||||    
T  2832 atacaagccacctaagatgtggaagaaaccgaacctggaaggcatcggctcaaggaaatgtaattgtccatttaggttgaaaggttt 2918  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 32490 - 32561
Alignment:
Q  391 ataggttatgacatttttaggtcggtcgatgttcgtcatattttttggtggtattagaccccgacatatttt 462  Q
    ||||||||||||| |||| ||  ||||  |||||||| || ||||||||||||||| |||||||| ||||||    
T  32490 ataggttatgacactttttggcaggtcagtgttcgtcctagtttttggtggtattacaccccgacgtatttt 32561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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