View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14186_low_1 (Length: 496)
Name: NF14186_low_1
Description: NF14186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14186_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 37936783 - 37937256
Alignment:
| Q |
9 |
agcaaaggcttaatcgtatctttcaacgtcaaagatttaccttcgctttcttttccttgaaaaactcgcttcaacaaattttcaatgctcttcgttgaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37936783 |
agcaaaggcttaatcgtatctttcaacgtcaaagatttaccttcgctttcttttccttgaaaaactcgcttcaacaaattttcaatgctcttcgttgaga |
37936882 |
T |
|
| Q |
109 |
atctacggcgccggcggaaaacaccgacggatttcattttatagaattcatgattcctgtcagcaatgaaattcacagcatctctagcagtatagagagg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37936883 |
atctacggcgccggcggaaaacaccgacggatttcattttatagaattcatgattcctgtcagcaatgaaattcacagcatctctagcagtatagagagg |
37936982 |
T |
|
| Q |
209 |
tctaccaaatccatcatcagctgtgatcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgagga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37936983 |
tctaccaaatccatcatcagctgtgatcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgagga |
37937082 |
T |
|
| Q |
309 |
tcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcgccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37937083 |
tcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcgccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttt |
37937182 |
T |
|
| Q |
409 |
tggatgttgttccacattgtgaaactgatagccattgttgttctagttttgtgaatatctctagtgttactttg |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37937183 |
tggatgttgttccacattgtgaaactgatagccattgttgttctagttttgtgaatatctctagtgttactttg |
37937256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 411
Target Start/End: Complemental strand, 32039903 - 32039723
Alignment:
| Q |
231 |
gtgatcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatct |
330 |
Q |
| |
|
||||||||||||||||| || || ||||| || || || | || ||||| ||| |||||| || |||||||||||||| |||||| | ||||||| |
|
|
| T |
32039903 |
gtgatcattgcagcgaggatagcgccaattccggtaccagcgacaatgtcgaagaaatcaacgacgtgagcgtgaggatcagaggtttgaagacggatct |
32039804 |
T |
|
| Q |
331 |
gatcctcaaggtggatcaaggcagcgccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttttgg |
411 |
Q |
| |
|
|||| || || ||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32039803 |
gatcttcgagatggattaaagcagcgccggctacaatggcggttgttcctccgccgtcaatgctgagaatgcgagttttgg |
32039723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University