View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14186_low_4 (Length: 453)

Name: NF14186_low_4
Description: NF14186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14186_low_4
NF14186_low_4
[»] chr7 (3 HSPs)
chr7 (14-439)||(48085153-48085558)
chr7 (101-146)||(48102491-48102536)
chr7 (76-140)||(1809526-1809590)
[»] chr6 (1 HSPs)
chr6 (76-143)||(7385568-7385635)
[»] chr1 (3 HSPs)
chr1 (14-152)||(35376267-35376405)
chr1 (73-153)||(35357711-35357791)
chr1 (74-134)||(35364521-35364581)
[»] chr4 (1 HSPs)
chr4 (21-113)||(6339168-6339260)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 439
Target Start/End: Original strand, 48085153 - 48085558
Alignment:
Q  14 caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48085153 caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgctttttggga 48085252  T
Q  114 tgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccaaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085253 tgcattccatccatctgaaaaggcaaacaaaatcatagtcaaccgaatccttaggggcagtgctcagtacatgtatcccatgaatctcagcactatcatg 48085352  T
Q  214 gccttagattccaggacttgatcaatccatccaagacatttggttaatgnnnnnnngttagtttatgtgtgtattttctttatctgtgtccctttaattt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||              
T  48085353 gccttagattccaggacttgatcaatccatccaagacatttggttaatgtttttttgttagtttatgtgtgtattttctttatctgtgtc---------- 48085442  T
Q  314 atccattaatcttttgttttgtattccatagctagtggtttgtcatgccaagttcttgagtactggttttcccactcaaattgtcagtaataaaatgtct 413  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48085443 ----------cttttgttttgtattccatagctagtggtttgtcatgccaagttcttgagtactggttttcccactcaaattgtcagtaataaaatgtct 48085532  T
Q  414 tcctttgattcaatcctagtgcaaac 439  Q
    ||||||| ||||||||||||||||||    
T  48085533 tcctttgtttcaatcctagtgcaaac 48085558  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 48102491 - 48102536
Alignment:
Q  101 atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48102491 atgcattttgggatgcattccatccatctgaaaaggcaaacaaaat 48102536  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 1809526 - 1809590
Alignment:
Q  76 aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaa 140  Q
    ||||||||||| ||||||||  |  ||| |||||||||| |||||||||||||||||||||||||    
T  1809526 aacttgtgccctaacagagacttgtatgtattttgggatccattccatccatctgaaaaggcaaa 1809590  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 7385635 - 7385568
Alignment:
Q  76 aacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaa 143  Q
    ||||||||| |||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||    
T  7385635 aacttgtgctcaaatagagacttaaatgcattttgggatgcattccatccatctgaaaaggcaaacaa 7385568  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 35376405 - 35376267
Alignment:
Q  14 caaaggtagcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga 113  Q
    ||||| |||| || ||||||||||| || ||||||||  |||| || || |||||    ||||||||||||| |||  |||| ||| |||||||||||||    
T  35376405 caaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagacctttatgcattttggga 35376306  T
Q  114 tgcattccatccatctgaaaaggcaaacaaaatcatagt 152  Q
    | ||||||||||||||||||| || | || |||||||||    
T  35376305 tccattccatccatctgaaaaagctagcagaatcatagt 35376267  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 35357791 - 35357711
Alignment:
Q  73 tcaaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtc 153  Q
    ||||| |||||||||||  || | ||| ||||||||||||||||||| |||||||||||||| || | || ||||||||||    
T  35357791 tcaaaattgtgcccaaatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtc 35357711  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 35364581 - 35364521
Alignment:
Q  74 caaacttgtgcccaaacagagaacttaatgcattttgggatgcattccatccatctgaaaa 134  Q
    |||||||||||| |||  |||| ||  |||||||||||||| || ||||||||||||||||    
T  35364581 caaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaa 35364521  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 6339260 - 6339168
Alignment:
Q  21 agcatgctgtggacaagggccatacaatggacttgggctttgtacaccagcctcaaacttgtgcccaaacagagaacttaatgcattttggga 113  Q
    |||||| ||||| ||||| |||| ||||||| |||| || ||||| ||||| || ||||||||||| || || || ||| |||||||||||||    
T  6339260 agcatgttgtggtcaaggaccattcaatggagttggactatgtactccagcttctaacttgtgccctaatagggatctttatgcattttggga 6339168  T

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