View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14186_low_6 (Length: 410)
Name: NF14186_low_6
Description: NF14186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14186_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 6816764 - 6816374
Alignment:
| Q |
19 |
ctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816764 |
ctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaacc |
6816665 |
T |
|
| Q |
119 |
gcagaatcatgctcggtggtagcagca---------gctgttgcattctcaacctcaacagctatcccaggtggtcctaatcaaaataatggtataccac |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816664 |
gcagaatcatgctcggtggtagcagcacttgctgcagctgttgcattcacaacctcaacatctatcccaggtggtcctaatcaaaataatggtataccac |
6816565 |
T |
|
| Q |
210 |
tatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactcac |
309 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
6816564 |
tatttatgaaagaacctgcttacaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagctcttgtttcgtttctttcgatactcac |
6816465 |
T |
|
| Q |
310 |
atctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgtg |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6816464 |
atctaggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgtg |
6816374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 6831192 - 6830802
Alignment:
| Q |
19 |
ctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaacc |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6831192 |
ctatgaacgttataataaggatgggaaaacagcaaagcaagtcttcattgatacacacgcaccacttacaaaagaaggtagtaaatggctcaccaaaacc |
6831093 |
T |
|
| Q |
119 |
gcagaatcatgctcggtggtagca---------gcagctgttgcattctcaacctcaacagctatcccaggtggtcctaatcaaaataatggtataccac |
209 |
Q |
| |
|
|||||||| ||||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||||| |||| |
|
|
| T |
6831092 |
gcagaatcttgctcagtggtagcagcacttgttgcaactgttgcattcacaacctcgacagctatcccaggtggtcctgatcaagaatccggtatgccac |
6830993 |
T |
|
| Q |
210 |
tatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactcac |
309 |
Q |
| |
|
|| | || || | |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | | |||||||| |
|
|
| T |
6830992 |
tactgctagaaaagcctgctttcaaactctatgctgtagcatcacttgttgcactttgctcctctgtcacagcccttgttttgtttctttccatactcac |
6830893 |
T |
|
| Q |
310 |
atctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6830892 |
atctcggtttgaagaaaaagattttgttattgacttaccaagaaagcttcttgtagggttgactacactcttcacatctatagcatctgtg |
6830802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 6808800 - 6808414
Alignment:
| Q |
19 |
ctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcattgagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaacc |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6808800 |
ctatgaacgttataataaggatgggaaaacagcaaagcaggtcttcattgacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaact |
6808701 |
T |
|
| Q |
119 |
gcagaatcatgctcggtggtagcagca------gc---tgttgcattctcaacctcaacagctatcccaggtggtcctaatcaaaataatggtataccac |
209 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||||||| ||||||||||| ||||||||||||| | || | || ||||||||||| |
|
|
| T |
6808700 |
gcagaatcatgctcagtggtagcagcacttgttgcaagtgttgcattcacaacctcaacatctatcccaggtgg---ttatgatgatgatggtataccaa |
6808604 |
T |
|
| Q |
210 |
tatttataaaagaacctgctttcaaactctatgctgcagcatcacttgttgcactttgcttctctgtcacagcccttgtttcgnnnnnnncgatactcac |
309 |
Q |
| |
|
|||| ||||| | |||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||| || |||||| | ||||||| || |
|
|
| T |
6808603 |
tattcctaaaaaagcctgttttcaaactatatgctgtagcatcacttgttgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaac |
6808504 |
T |
|
| Q |
310 |
atctcggtttgaagaaaaagattttgttgtggacttaccaagaaggcttcttgtagggttgactacactcttcacatctatagcatctgt |
399 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6808503 |
gtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagcttcttctagggttgactacactcttcacatctatagcatctgt |
6808414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University