View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14186_low_9 (Length: 291)
Name: NF14186_low_9
Description: NF14186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14186_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 98 - 275
Target Start/End: Complemental strand, 34977622 - 34977447
Alignment:
| Q |
98 |
aatgataattcaaattataaataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaatcct |
197 |
Q |
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| T |
34977622 |
aatgataattcaaatgataa-taaagatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgagaatagta-aatcct |
34977525 |
T |
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| Q |
198 |
ttttagatagtacaattagcctatagtataaatactatcttgtaatcacttttcgtcttaatgaatcatttcacattt |
275 |
Q |
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| T |
34977524 |
tttcagatagcacaattagcctatagtataaatactatcttgtaatcccttttcatcttaatgaatcatttcacattt |
34977447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 19913750 - 19913614
Alignment:
| Q |
131 |
taagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaatcctttttagatagtacaattagcctatagtataaat |
230 |
Q |
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| T |
19913750 |
taagaaatcttatagtacaagtaattagtatt-acattgtactttaggttgaggatagtacaatccttctaagatagtacaattagcatattgtataaat |
19913652 |
T |
|
| Q |
231 |
actatcttgtaatcacttttcgtcttaatgaatcattt |
268 |
Q |
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| T |
19913651 |
actttgatgtaacctcttttcatcttaaagaatcattt |
19913614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 19915283 - 19915218
Alignment:
| Q |
203 |
gatagtacaattagcctatagtataaatactatcttgtaatcacttttcgtcttaatgaatcattt |
268 |
Q |
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| T |
19915283 |
gatagtacaattagcatattgtataaatactttgatgtaacctcttttcatcttaatgaatcattt |
19915218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 19915305 - 19915273
Alignment:
| Q |
162 |
ttacattgtactttagcttgaggatagtacaat |
194 |
Q |
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| T |
19915305 |
ttacattgtagtttagcttgaggatagtacaat |
19915273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 19799180 - 19799032
Alignment:
| Q |
94 |
acacaatgataattcaaattataaataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaa |
193 |
Q |
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||||||||||| |||||||||||| ||||||| ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
19799180 |
acacaatgatagttcaaattataa-taaggataatagtgagaaatcttgtagtacaagtaactagtttt-acattgtactttagcttgaggataatacaa |
19799083 |
T |
|
| Q |
194 |
tcctttttagatagtacaattagcctatagtataaatactatcttgtaatc |
244 |
Q |
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|||| || |||||||||||||||| | ||||||| |||||||||||||||| |
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| T |
19799082 |
tcctcttaagatagtacaattagcatctagtatatatactatcttgtaatc |
19799032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 8125005 - 8124832
Alignment:
| Q |
98 |
aatgataattcaaattataa-ataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaatcc |
196 |
Q |
| |
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||||||| ||||||| |||| ||| |||| | || ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
8125005 |
aatgatagttcaaatgataatatatggataacagcaagaaaacttgtagtacaagtaactagattt-acattgtactttagcttgaggatagtacaatcc |
8124907 |
T |
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| Q |
197 |
tttttagatagtacaattagcctatagtataaatactatcttgtaatcacttttcgtcttaatgaatcatttcaca |
272 |
Q |
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| || || ||||||||||||| | ||||||| |||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
8124906 |
tcttaaggtagtacaattagcatctagtatatatactaccttgtaatcctttttcg-gttaatgaatcatttcaca |
8124832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 19807234 - 19807113
Alignment:
| Q |
94 |
acacaatgataattcaaattataaataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaa |
193 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||| ||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19807234 |
acacaatgatagttcaaatgataa-taaggataatagtgagaaattttgtagcacaagtaactagtttt-acattgtactttagcttgaggatagtacaa |
19807137 |
T |
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| Q |
194 |
tcctttttagatagtacaattagc |
217 |
Q |
| |
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|||| || |||||||||||||||| |
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| T |
19807136 |
tcctcttaagatagtacaattagc |
19807113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 17127267 - 17127399
Alignment:
| Q |
117 |
aataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaatcct-ttttagatagtacaatta |
215 |
Q |
| |
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|||| |||||||| | |||||||||||| ||||||||| ||| |||||||| |||| |||||| ||||||||||||| || || |||||||||| ||| |
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| T |
17127267 |
aatagggatgataatgagaaaacttgtagtacaagtaattag--tttacattttactctagcttaaggatagtacaattctcttagagatagtacattta |
17127364 |
T |
|
| Q |
216 |
gcctatagtataaatactatcttgtaatcactttt |
250 |
Q |
| |
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| T |
17127365 |
tcatatagtttatatactatcctgtaaccactttt |
17127399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 17132144 - 17132276
Alignment:
| Q |
117 |
aataaggatgatagtaagaaaacttgtactacaagtaactagtttttacattgtactttagcttgaggatagtacaatcct-ttttagatagtacaatta |
215 |
Q |
| |
|
|||| |||||||| | |||||||||||| ||||||||| ||| |||||||| |||| |||||| ||||||||||||| || || |||||||||| ||| |
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| T |
17132144 |
aatagggatgataatgagaaaacttgtagtacaagtaattag--tttacattttactctagcttaaggatagtacaattctcttagagatagtacattta |
17132241 |
T |
|
| Q |
216 |
gcctatagtataaatactatcttgtaatcactttt |
250 |
Q |
| |
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| T |
17132242 |
tcatatagtttatatactatcctgtaaccactttt |
17132276 |
T |
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