View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14187_low_1 (Length: 555)
Name: NF14187_low_1
Description: NF14187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14187_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 3 - 555
Target Start/End: Complemental strand, 1316189 - 1315632
Alignment:
| Q |
3 |
aatatcagccaccacacttgttttaaaggtttaaaagaaaaaacctctcatctcatgtnnnnnnnnnntacaaatcttattttatttatttttcaaagaa |
102 |
Q |
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| T |
1316189 |
aatatcagcccccacacttgttttaaaggtttaaaagaaaaaacctctcatctcatgtaaaaaaaaaatacaaatcttattttatttatttttcaaagaa |
1316090 |
T |
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| Q |
103 |
cgagtactacattgttttgaagta---atatgatgaaaatggacatcgttatctacatgtggataaattctacaagcctgtaagtaactaatttactctt |
199 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1316089 |
cgagtactacaatgttttgaagtactaatatgatgaaaatggacatcgttatctacatgtggataaattctacaagcctgtaagtaactaatttactctt |
1315990 |
T |
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| Q |
200 |
tcaagctagtcactaaaagtctacacatatatagctattagaagctagtgacctagtgacacgtgagagttcaatttcaagttttatacaattttcaact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1315989 |
tcaagctagtcactaaaagtctacacatatatagctattagaagctagtgacctagtgacacgtgagagttcaatttcaagtcttatacaattttcaact |
1315890 |
T |
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| Q |
300 |
ctttaagccatttggtatgcagaggacatggatcctgcttgccttgagcaatagccttctcagaaagagcataaaaccaaccattcctccatttgaactg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1315889 |
ctttaagccatttggtatgcagaggacatggatcctgcttgccttgggcaatagccttctcagaaagagcataaaaccaaccattcctccatttgaactg |
1315790 |
T |
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| Q |
400 |
caaacataacatagatattgattaaaacattaata-nnnnnnngaaccatataaattctta-ttataacaattcacttaattataaatgaatattgcaat |
497 |
Q |
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| T |
1315789 |
caaacataacatagatattgattaaaacattaatatttttttttaaccatataaattcttatttataacaatgcacttaattataaatgaatattgcaat |
1315690 |
T |
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| Q |
498 |
ttggctttatttaatgaatgaaatgtgattaataggattattctctgggtaggctgcc |
555 |
Q |
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| T |
1315689 |
tgggctttatttaatgaatgaaatgtgatgaataggattattctttggttaggctgcc |
1315632 |
T |
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