View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14187_low_3 (Length: 350)

Name: NF14187_low_3
Description: NF14187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14187_low_3
NF14187_low_3
[»] scaffold0300 (1 HSPs)
scaffold0300 (33-205)||(15735-15909)
[»] chr6 (14 HSPs)
chr6 (33-205)||(24672558-24672732)
chr6 (153-204)||(28188112-28188164)
chr6 (153-205)||(34491150-34491203)
chr6 (152-205)||(34492421-34492474)
chr6 (166-206)||(18325539-18325579)
chr6 (154-205)||(28562774-28562826)
chr6 (165-206)||(28189268-28189310)
chr6 (153-204)||(2405053-2405104)
chr6 (152-207)||(17183317-17183372)
chr6 (152-206)||(19634500-19634555)
chr6 (153-206)||(2403672-2403726)
chr6 (152-205)||(17139766-17139818)
chr6 (153-205)||(20400140-20400193)
chr6 (159-207)||(17141211-17141259)
[»] chr3 (22 HSPs)
chr3 (205-333)||(44698666-44698794)
chr3 (152-206)||(28039984-28040038)
chr3 (153-204)||(24171793-24171845)
chr3 (152-205)||(21959887-21959941)
chr3 (152-206)||(49116839-49116893)
chr3 (70-139)||(39747051-39747120)
chr3 (153-203)||(24170599-24170650)
chr3 (159-205)||(5117788-5117834)
chr3 (166-204)||(23494350-23494388)
chr3 (152-205)||(5117363-5117416)
chr3 (153-206)||(7104672-7104725)
chr3 (165-206)||(26165875-26165916)
chr3 (152-205)||(26167228-26167281)
chr3 (159-204)||(39747183-39747227)
chr3 (152-203)||(23495746-23495797)
chr3 (156-207)||(28038783-28038833)
chr3 (154-205)||(39274616-39274667)
chr3 (152-205)||(5118805-5118859)
chr3 (160-205)||(50563944-50563989)
chr3 (160-204)||(7104546-7104589)
chr3 (159-206)||(18320964-18321012)
chr3 (165-205)||(46565259-46565299)
[»] chr4 (28 HSPs)
chr4 (41-204)||(4499680-4499845)
chr4 (57-206)||(4493689-4493840)
chr4 (152-206)||(46079139-46079193)
chr4 (153-207)||(48183190-48183244)
chr4 (153-206)||(21020031-21020085)
chr4 (153-206)||(40314214-40314267)
chr4 (153-206)||(40324290-40324343)
chr4 (152-200)||(23020155-23020203)
chr4 (153-206)||(25439130-25439184)
chr4 (153-206)||(30607198-30607252)
chr4 (153-206)||(48181822-48181876)
chr4 (152-205)||(10670328-10670381)
chr4 (152-205)||(10883967-10884020)
chr4 (153-205)||(34423225-34423278)
chr4 (153-208)||(34422048-34422104)
chr4 (160-204)||(42250138-42250182)
chr4 (153-203)||(21021233-21021284)
chr4 (153-204)||(23019001-23019052)
chr4 (159-205)||(21075156-21075202)
chr4 (153-205)||(30606024-30606077)
chr4 (153-205)||(40315387-40315440)
chr4 (153-205)||(40325462-40325515)
chr4 (159-206)||(21077136-21077184)
chr4 (152-204)||(53552298-53552352)
chr4 (78-139)||(11597334-11597395)
chr4 (153-205)||(25437929-25437982)
chr4 (152-205)||(33269519-33269572)
chr4 (166-206)||(21464123-21464163)
[»] chr7 (31 HSPs)
chr7 (54-139)||(26906384-26906469)
chr7 (56-206)||(34461050-34461201)
chr7 (154-206)||(28240665-28240717)
chr7 (158-205)||(44523535-44523582)
chr7 (154-207)||(39174261-39174314)
chr7 (152-204)||(11651340-11651392)
chr7 (152-208)||(15993775-15993831)
chr7 (152-207)||(39050645-39050701)
chr7 (153-204)||(7468064-7468115)
chr7 (56-139)||(26905263-26905346)
chr7 (157-206)||(29675655-29675705)
chr7 (152-207)||(15992326-15992382)
chr7 (152-204)||(32040953-32041005)
chr7 (165-204)||(7469262-7469301)
chr7 (152-206)||(44378706-44378761)
chr7 (152-206)||(44387573-44387628)
chr7 (152-207)||(48989276-48989331)
chr7 (152-206)||(21520442-21520496)
chr7 (153-206)||(27249966-27250020)
chr7 (159-205)||(37747435-37747481)
chr7 (153-205)||(27251125-27251178)
chr7 (153-205)||(44377461-44377514)
chr7 (153-205)||(44386328-44386381)
chr7 (152-204)||(28395005-28395057)
chr7 (166-206)||(32042987-32043027)
chr7 (155-205)||(26906486-26906537)
chr7 (166-204)||(30917434-30917472)
chr7 (89-203)||(34459195-34459310)
chr7 (153-202)||(39049940-39049990)
chr7 (178-211)||(29674537-29674570)
chr7 (165-208)||(30465090-30465134)
[»] chr5 (14 HSPs)
chr5 (153-208)||(3371333-3371388)
chr5 (153-207)||(7121317-7121371)
chr5 (153-205)||(7122512-7122565)
chr5 (153-206)||(21789547-21789600)
chr5 (153-204)||(40728279-40728331)
chr5 (152-204)||(3859759-3859812)
chr5 (153-204)||(3370128-3370180)
chr5 (154-206)||(7006355-7006406)
chr5 (158-206)||(31795818-31795865)
chr5 (152-200)||(40721676-40721723)
chr5 (157-205)||(42537076-42537124)
chr5 (165-203)||(293067-293105)
chr5 (166-207)||(22714549-22714590)
chr5 (150-201)||(25642730-25642782)
[»] chr2 (8 HSPs)
chr2 (153-204)||(15249546-15249597)
chr2 (152-205)||(5202728-5202782)
chr2 (153-205)||(15248388-15248441)
chr2 (152-203)||(25979588-25979638)
chr2 (179-229)||(18747950-18747998)
chr2 (159-208)||(10746215-10746264)
chr2 (152-206)||(18695344-18695400)
chr2 (166-207)||(42744127-42744168)
[»] chr8 (20 HSPs)
chr8 (152-206)||(9555842-9555896)
chr8 (152-205)||(37483391-37483444)
chr8 (153-205)||(26170401-26170453)
chr8 (153-205)||(38983286-38983339)
chr8 (153-205)||(39014383-39014436)
chr8 (153-205)||(44057140-44057193)
chr8 (152-204)||(43323790-43323842)
chr8 (152-206)||(20165866-20165921)
chr8 (153-207)||(26169195-26169250)
chr8 (153-204)||(4081876-4081929)
chr8 (153-204)||(4086025-4086078)
chr8 (159-205)||(44058258-44058304)
chr8 (153-205)||(20164623-20164676)
chr8 (153-205)||(38982109-38982162)
chr8 (153-205)||(39013206-39013259)
chr8 (159-208)||(43325067-43325116)
chr8 (165-203)||(14529631-14529669)
chr8 (169-215)||(37124188-37124233)
chr8 (166-202)||(1178388-1178424)
chr8 (159-203)||(37482270-37482314)
[»] chr1 (27 HSPs)
chr1 (153-208)||(10374130-10374185)
chr1 (154-205)||(49762584-49762635)
chr1 (152-208)||(20159218-20159275)
chr1 (90-215)||(38132608-38132733)
chr1 (166-208)||(22058693-22058735)
chr1 (152-206)||(48643344-48643398)
chr1 (153-205)||(16831059-16831112)
chr1 (152-208)||(17865681-17865738)
chr1 (153-205)||(20160425-20160478)
chr1 (153-204)||(16829854-16829906)
chr1 (154-205)||(17864836-17864888)
chr1 (153-204)||(27362155-27362207)
chr1 (153-204)||(49763707-49763759)
chr1 (152-206)||(22059795-22059849)
chr1 (153-206)||(46625797-46625851)
chr1 (152-206)||(50961354-50961408)
chr1 (156-204)||(21813845-21813894)
chr1 (152-205)||(38174064-38174117)
chr1 (153-205)||(46624603-46624656)
chr1 (152-207)||(6668311-6668367)
chr1 (153-204)||(27361384-27361436)
chr1 (150-208)||(36632261-36632317)
chr1 (159-206)||(45459210-45459257)
chr1 (153-206)||(21796113-21796167)
chr1 (153-205)||(27902952-27903005)
chr1 (153-198)||(50962681-50962726)
chr1 (154-205)||(7378444-7378496)
[»] scaffold0012 (2 HSPs)
scaffold0012 (153-204)||(53372-53423)
scaffold0012 (152-202)||(54511-54562)
[»] scaffold0230 (1 HSPs)
scaffold0230 (166-206)||(18776-18816)
[»] scaffold0265 (1 HSPs)
scaffold0265 (156-204)||(18915-18964)
[»] scaffold0087 (1 HSPs)
scaffold0087 (154-203)||(42090-42139)
[»] scaffold0013 (2 HSPs)
scaffold0013 (165-204)||(99613-99652)
scaffold0013 (153-205)||(100914-100967)
[»] scaffold0862 (2 HSPs)
scaffold0862 (153-206)||(682-735)
scaffold0862 (152-205)||(2154-2207)


Alignment Details
Target: scaffold0300 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 15909 - 15735
Alignment:
Q  33 ttcacagctggcgcgccacatcatgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaa 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  15909 ttcacagctggcgcgccacatcatgccacgtcagcaggtggagtgtgtcatatgggatcaggggtgttttcgaaagaatcttcatattacagggacagaa 15810  T
Q  133 tctaaacgaannnnnnnata-gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||       | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15809 tctaaacgaatttttttacaggggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccct 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 24672732 - 24672558
Alignment:
Q  33 ttcacagctggcgcgccacatcatgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaa 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  24672732 ttcacagctggcgcgccacatcatgccacgtcagcaggtggagtgtgtcatatgggatcaggggtgttttcgaaagaatcttcatattacagggacagaa 24672633  T
Q  133 tctaaacgaannnnnnnata-gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||       | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24672632 tctaaacgaatttttttacaggggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccct 24672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 28188164 - 28188112
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccc 204  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28188164 gggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccc 28188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 34491203 - 34491150
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  34491203 gggggaaaaccaaaactcgcccaaattacaggggggtaaaaacatattaaccct 34491150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 34492421 - 34492474
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||| | ||||||||||||||||||||| |||||||||||||||||||    
T  34492421 agggggtaaatcggaactcgcccaaattacagggagtaaaaacatattaaccct 34492474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 18325579 - 18325539
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  18325579 aactcgcccaaattacagggggtaaagacatattaaccctt 18325539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 28562826 - 28562774
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccct 205  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  28562826 gggggaaaccagaactcgcccaaattacaggtggataaaaacatattaaccct 28562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 28189268 - 28189310
Alignment:
Q  165 gaactcgcccaaattacagggg-gtaaaaacatattaaccctt 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  28189268 gaactcgcccaaattacaggggggtaaaaacatattaaccctt 28189310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 2405053 - 2405104
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    ||||| ||||| ||||||||| ||||||||| ||||||| ||||||||||||    
T  2405053 gggggtaaaccggaactcgcctaaattacagagggtaaagacatattaaccc 2405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 17183372 - 17183317
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    |||||| ||| | ||||||||| ||||||||||||||||| ||||||||| |||||    
T  17183372 agggggtaaatcggaactcgcctaaattacagggggtaaatacatattaatcctta 17183317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 19634555 - 19634500
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacaggggg-taaaaacatattaaccctt 206  Q
    |||||| |||||  |||||||| ||||||||||||| |||||||||||||||||||    
T  19634555 agggggtaaaccgaaactcgcctaaattacaggggggtaaaaacatattaaccctt 19634500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 2403726 - 2403672
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccctt 206  Q
    ||||| ||||| ||||||||| ||||||||| |||||||| ||||||||||||||    
T  2403726 gggggtaaaccggaactcgcctaaattacaggggggtaaatacatattaaccctt 2403672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 17139818 - 17139766
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| |||||||||||||||||| |||||||| |||| ||||||||    
T  17139818 agggggtaaaccggaactcgcccaaattaca-ggggtaaagacatgttaaccct 17139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 20400193 - 20400140
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||| |||||  ||||||||||||||||| ||||||||| |||||||||||||    
T  20400193 gggggtaaaccgaaactcgcccaaattacaagggggtaaagacatattaaccct 20400140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 17141211 - 17141259
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||| ||||||| | ||||||||||||||| | |||||||||||||||    
T  17141211 aaaccggaactcgactaaattacagggggtatagacatattaaccctta 17141259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 44698666 - 44698794
Alignment:
Q  205 ttatgaatattgtactgaaataatactgtactattagctagctataaaaagttagtttttcccatggttttctcggtgaagtcctcttttgcttcttcct 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44698666 ttatgaatattgtactgaaataatactgtactattagctagctataaaaagttagtttttcccatggttttctcggtgaagtcctc-tttgcttcttcct 44698764  T
Q  305 -gggattaaaatcagatggagtagtactag 333  Q
     |||||||||||||||||||||||||||||    
T  44698765 ggggattaaaatcagatggagtagtactag 44698794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 28039984 - 28040038
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  28039984 agggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccctt 28040038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 24171793 - 24171845
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24171793 gggggaaaaccagaactcgcccaaattacaggggggtaaaaacatattaaccc 24171845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 21959941 - 21959887
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  21959941 agggggaaaaccggaactcgctcaaattacaggggggtaaaaacatattaaccct 21959887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 49116839 - 49116893
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  49116839 agggggtaaaccggaactcgctcaaattacagggggtaaagacatattaaccctt 49116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 39747120 - 39747051
Alignment:
Q  70 gtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaac 139  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||| ||| | || |||| ||||||||||    
T  39747120 gtggagtgtgtcaaatggaatcaggggtgttttcgaaagaatcttcatacttcatggacggaatctaaac 39747051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 24170650 - 24170599
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaacc 203  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||    
T  24170650 gggggtaaaccggaactcgcccaaattacaggggggtaaaaacatattaacc 24170599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 5117834 - 5117788
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  5117834 aaaccggaactcgcctaaattacagggggtaaagacatattaaccct 5117788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 23494388 - 23494350
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  23494388 aactcgcccaaattacagggggtaaagacatattaaccc 23494350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 5117416 - 5117363
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||  |||||| |||||||||||||||||||| |||||||||||||    
T  5117416 agggggtaaactggaactcacccaaattacagggggtaaagacatattaaccct 5117363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 7104672 - 7104725
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||||||||| ||||| | ||||||||||||| ||||| ||||||||||||||    
T  7104672 gggggaaaaccggaacttgtccaaattacagggtgtaaagacatattaaccctt 7104725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 26165916 - 26165875
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  26165916 gaactcgcccaaattatagggggtaaagacatattaaccctt 26165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 26167228 - 26167281
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| ||| ||||| ||||||||||||||||| |||||||||||||    
T  26167228 agggggtaaaccggaattcgcctaaattacagggggtaaagacatattaaccct 26167281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 39747183 - 39747227
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  39747183 aaaccagaactcgcccaaattaca-ggggtaaaaatatattaaccc 39747227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 23495746 - 23495797
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    |||||| |||||  |||||||| ||||||||||||||||| |||||||||||    
T  23495746 agggggtaaaccgaaactcgcctaaattacagggggtaaatacatattaacc 23495797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 28038833 - 28038783
Alignment:
Q  156 ggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||||||  ||||||||||||||||| |||||||| |||||||||||||||    
T  28038833 ggaaaaccgaaactcgcccaaattaca-ggggtaaagacatattaaccctta 28038783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 39274616 - 39274667
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||| ||||| |||||||||||||||||||||  |||| |||||||||||||    
T  39274616 ggggtaaaccggaactcgcccaaattacagggactaaagacatattaaccct 39274667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 5118805 - 5118859
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccct 205  Q
    |||||| ||||| |||||| || |||||||||| |||||||||||||||||||||    
T  5118805 agggggtaaaccggaactcacctaaattacaggagggtaaaaacatattaaccct 5118859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 50563989 - 50563944
Alignment:
Q  160 aaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||| ||||||||| |||||||||| |||||| |||||||||||||    
T  50563989 aaccggaactcgcctaaattacaggtggtaaagacatattaaccct 50563944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 7104589 - 7104546
Alignment:
Q  160 aaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||    
T  7104589 aaccggaactcgcccaaattaca-ggggtaaagacatattaaccc 7104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 18320964 - 18321012
Alignment:
Q  159 aaaccagaactcgcccaaattacagggg-gtaaaaacatattaaccctt 206  Q
    ||||| ||||||||||||||| |||||| ||||| ||||||||||||||    
T  18320964 aaaccggaactcgcccaaattgcaggggagtaaagacatattaaccctt 18321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 46565299 - 46565259
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  46565299 gaactcacccaaattataaggggtaaaaacatattaaccct 46565259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 4499680 - 4499845
Alignment:
Q  41 tggcgcgccacatcatgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaacg 140  Q
    ||||||||||| ||||||||| ||| ||| |||||||||||| |||||||||||||  |||||||| ||||||| ||||| ||||||||||||||||||     
T  4499680 tggcgcgccacgtcatgccacatcatcagctggagtgtgtcaaatgggatcagggggattttcgaaggaatcttcatatttcagggacagaatctaaact 4499779  T
Q  141 aannnnnnnata-gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
     |       | | ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  4499780 tatttttttacaggggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 4499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 4493840 - 4493689
Alignment:
Q  57 gccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaacgaannnnnnnatagggg 156  Q
    ||||||||| ||| ||||||||| || ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||  |       | |||||    
T  4493840 gccacgtcatcagctggagtgtggcaaatgggatcaggggggttttcgaaggaatcttcatatttcagggacagaatctaaacttatttttttacagggg 4493741  T
Q  157 g-aaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    | |||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  4493740 gaaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 4493689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 46079193 - 46079139
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46079193 agggggtaaaccggaactcgcccaaattacagggggtaaaaacatattaaccctt 46079139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 48183190 - 48183244
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  48183190 gggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccctta 48183244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21020085 - 21020031
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccctt 206  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21020085 gggggaaaaccagaactcgccctaattacaggggggtaaaaacatattaaccctt 21020031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 40314267 - 40314214
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  40314267 gggggaaaaccggaactcgcccaaattacaggaggtaaagacatattaaccctt 40314214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 40324343 - 40324290
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  40324343 gggggaaaaccggaactcgcccaaattacaggaggtaaagacatattaaccctt 40324290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 23020155 - 23020203
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatatta 200  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  23020155 agggggaaaaccggaactcgcccaaattacagggggtaaagacatatta 23020203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 25439130 - 25439184
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattac-agggggtaaaaacatattaaccctt 206  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  25439130 gggggaaaaccggaactcgcccaaattacaagggggtaaagacatattaaccctt 25439184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 30607198 - 30607252
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  30607198 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 30607252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 48181876 - 48181822
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccctt 206  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  48181876 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccctt 48181822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 10670381 - 10670328
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| |||||||||||||||||||| |||||| |||||||||||||    
T  10670381 agggggtaaaccggaactcgcccaaattacaggaggtaaagacatattaaccct 10670328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 10884020 - 10883967
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| |||||||||||||||||||| |||||| |||||||||||||    
T  10884020 agggggtaaaccggaactcgcccaaattacaggaggtaaagacatattaaccct 10883967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 34423225 - 34423278
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  34423225 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 34423278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 34422104 - 34422048
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaacccttat 208  Q
    |||||||||||  |||||||||||||||||| |||||||| ||||||||||||||||    
T  34422104 gggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaacccttat 34422048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 42250182 - 42250138
Alignment:
Q  160 aaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  42250182 aaccggaactcgcccaaattacagggggtaaatacatattaaccc 42250138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 21021233 - 21021284
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaacc 203  Q
    ||||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  21021233 gggggtaaaccggaactcgcccaaattacaggggggtaaaaacatattaacc 21021284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 23019052 - 23019001
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||||||||||    
T  23019052 gggggaaaatcgaaactcgcccaaattacaggggataaaaacatattaaccc 23019001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 21075202 - 21075156
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  21075202 aaaccggaactcgcctaaattacagggggtaaatacatattaaccct 21075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 30606077 - 30606024
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||||||||    
T  30606077 gggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 30606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 40315387 - 40315440
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||    
T  40315387 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40315440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 40325462 - 40325515
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||    
T  40325462 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 40325515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 21077136 - 21077184
Alignment:
Q  159 aaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  21077136 aaaccggaactcgcccaaattacaggggggtaaatacatattaaccctt 21077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 53552298 - 53552352
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacaggg--ggtaaaaacatattaaccc 204  Q
    |||||| ||||| |||||||||||||||||||||  |||||| ||||||||||||    
T  53552298 agggggtaaaccggaactcgcccaaattacagggaaggtaaagacatattaaccc 53552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 11597334 - 11597395
Alignment:
Q  78 tgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaac 139  Q
    ||||| ||||| ||| |||| |||||||||||||||| |||||  |||||| ||||||||||    
T  11597334 tgtcagatggggtcatgggcattttcgaaagaatcttcatattttagggacggaatctaaac 11597395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 25437982 - 25437929
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||| |||||| ||||||| ||||||||||| |||||||| |||||||||||||    
T  25437982 ggggaaaaaccggaactcgtccaaattacaggggggtaaagacatattaaccct 25437929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 33269519 - 33269572
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| ||||||| |||||||| ||||| |||| |||||||||||||    
T  33269519 agggggtaaaccggaactcgtccaaattataggggataaagacatattaaccct 33269572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 21464123 - 21464163
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  21464123 aactcgcccaaattaaaggggataaagacatattaaccctt 21464163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 26906384 - 26906469
Alignment:
Q  54 catgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaac 139  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||||| ||||| ||||||||||||||||||    
T  26906384 catgccacgtcagcaagtggagtgtgtcaaatggggtcaggagtgttttcgaaagaatcttcatatttcagggacagaatctaaac 26906469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 206
Target Start/End: Original strand, 34461050 - 34461201
Alignment:
Q  56 tgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaacgaannnnnnnata-gg 154  Q
    |||||||||| ||| | |||||||||| ||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||  |       | | ||    
T  34461050 tgccacgtcatcagctagagtgtgtcaaatgggatcagggg-gttttcgaaggaatcttcatatttcagggacagaatctaaacttatttttttacaggg 34461148  T
Q  155 gggaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccctt 206  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||||||||||||    
T  34461149 gggaaaaccggaactcgcccaaattacaggaaggtaaagacatattaaccctt 34461201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 28240717 - 28240665
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  28240717 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccctt 28240665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 44523535 - 44523582
Alignment:
Q  158 aaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  44523535 aaaaccagaactcgcccaaattacagggggtaaagacatattaaccct 44523582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 39174314 - 39174261
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39174314 ggggtaaaccagaactcgcccaaattacagtgggtaaagacatattaaccctta 39174261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 11651392 - 11651340
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  11651392 agggggtaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 11651340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 15993775 - 15993831
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    |||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||    
T  15993775 agggggtaaaccggaactcgcctaaattacagggggtaaatacatattaacccttat 15993831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 39050645 - 39050701
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctta 207  Q
    |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  39050645 agggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccctta 39050701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 7468115 - 7468064
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||||    
T  7468115 ggggaaaaaccggaactcgcccaaattacagggggtaaagacatattaaccc 7468064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 26905346 - 26905263
Alignment:
Q  56 tgccacgtcagcaggtggagtgtgtcatatgggatcaggggcgttttcgaaagaatctttatattacagggacagaatctaaac 139  Q
    ||||| ||||||| ||||||||||||| ||||| || |||| |||||||||||||| || ||||| || |||| ||||||||||    
T  26905346 tgccatgtcagcaagtggagtgtgtcaaatggggtccggggtgttttcgaaagaattttcatatttcaaggacggaatctaaac 26905263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 29675655 - 29675705
Alignment:
Q  157 gaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccctt 206  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  29675655 gaaaaccagaattcgcccaaattacaggagggtaaaaacatattaaccctt 29675705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 15992382 - 15992326
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccctta 207  Q
    |||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  15992382 agggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccctta 15992326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 32041005 - 32040953
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  32041005 agggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 32040953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 7469262 - 7469301
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7469262 gaactcgtccaaattacagggggtaaaaacatattaaccc 7469301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 44378706 - 44378761
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  44378706 agggggaaaaccggaactcgcccaaattagaggggggtaaatacatattaaccctt 44378761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 44387573 - 44387628
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  44387573 agggggaaaaccggaactcgcccaaattagaggggggtaaatacatattaaccctt 44387628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 48989331 - 48989276
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    |||||| |||||  || ||||||||||||||||||||||| |||||||||||||||    
T  48989331 agggggtaaaccgaaagtcgcccaaattacagggggtaaagacatattaaccctta 48989276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 21520496 - 21520442
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| || || ||||||||| |||||||||||||||||| |||||||||||||    
T  21520496 agggggtaagccggaactcgcctaaattacagggggtaaaatcatattaaccctt 21520442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 27250020 - 27249966
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccctt 206  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||    
T  27250020 gggggaaaaccggaactcgcccaaattacagcggggtaaagacatattatccctt 27249966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 37747435 - 37747481
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  37747435 aaaccggaactcgcctaaattacagggggtaaatacatattaaccct 37747481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 27251125 - 27251178
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||| | ||||||||| |||||||||||||    
T  27251125 gggggaaaaccggaactcgcccaaattataggggggtaaagacatattaaccct 27251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 44377514 - 44377461
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    ||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  44377514 gggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44377461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 44386381 - 44386328
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    ||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  44386381 gggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 44386328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 28395005 - 28395057
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||| ||||| ||||||||||||||||| ||||||||| || |||||||||    
T  28395005 agggggtaaaccggaactcgcccaaattacggggggtaaatacgtattaaccc 28395057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 32042987 - 32043027
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  32042987 aactcgtccaaattacagggggtaaagacatattaaccctt 32043027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 26906486 - 26906537
Alignment:
Q  155 gggaaaaccagaactcgcccaaattacaggggg-taaaaacatattaaccct 205  Q
    ||||||| | ||||||||||||||||||||||| |||| |||||||||||||    
T  26906486 gggaaaatcggaactcgcccaaattacagggggataaagacatattaaccct 26906537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 30917434 - 30917472
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30917434 aactcgcccaaattacagggaggaaaaacatattaaccc 30917472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 34459310 - 34459195
Alignment:
Q  89 atcaggggcgttttcgaaagaatctttatattacagggacagaatctaaacgaannnnnnnatagggggaaaaccagaactcgcccaaattacag-gggg 187  Q
    |||||||  ||||||||| ||||||| ||||| |||| ||| |||||||||  |       | ||||| ||||||  |||||||||||||||||| ||||    
T  34459310 atcagggaggttttcgaaggaatcttcatatttcaggaacataatctaaacttatttttttacaggggaaaaaccgaaactcgcccaaattacagggggg 34459211  T
Q  188 taaaaacatattaacc 203  Q
    |||| |||||||||||    
T  34459210 taaagacatattaacc 34459195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 39049990 - 39049940
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaac 202  Q
    ||||||||||| ||||||||| ||||||||| |||||||| ||||||||||    
T  39049990 gggggaaaaccggaactcgccaaaattacaggggggtaaagacatattaac 39049940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 29674570 - 29674537
Alignment:
Q  178 ttacagggggtaaaaacatattaacccttatgaa 211  Q
    ||||||||||||||||||||||||||||| ||||    
T  29674570 ttacagggggtaaaaacatattaacccttttgaa 29674537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 30465134 - 30465090
Alignment:
Q  165 gaactcgcccaaattacagggg-gtaaaaacatattaacccttat 208  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||    
T  30465134 gaactcgcccaaattacaggggtgtaaagacatattaaaccttat 30465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 3371333 - 3371388
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  3371333 gggggaaaaccggaactcgcccaaattacagggggtaaagacatattaacccttat 3371388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 7121371 - 7121317
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  7121371 gggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccctta 7121317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 7122512 - 7122565
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacaggg-ggtaaaaacatattaaccct 205  Q
    ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||    
T  7122512 gggggaaaaccggaactcgcccaaattacagggaggtaaagacatattaaccct 7122565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21789600 - 21789547
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||| |||||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  21789600 ggggaaaaaccggaactcgcctaaattacagggggtaaagacatattaaccctt 21789547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 40728279 - 40728331
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  40728279 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 40728331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 3859812 - 3859759
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccc 204  Q
    |||||| ||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  3859812 agggggtaaaccggaactcgcccaaattacaggggggtaaacacatattaaccc 3859759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 3370180 - 3370128
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccc 204  Q
    |||| |||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  3370180 ggggaaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 3370128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 7006355 - 7006406
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  7006355 ggggtaaatcagaactcgcccaaattaca-ggggtaaagacatattaaccctt 7006406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 31795865 - 31795818
Alignment:
Q  158 aaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  31795865 aaaaccaaaactcgcccaaattaca-ggggtaaaaacatactaaccctt 31795818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 40721723 - 40721676
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatatta 200  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||||    
T  40721723 agggggaaaaccggaactcgcccaaattaca-ggggtaaagacatatta 40721676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 42537076 - 42537124
Alignment:
Q  157 gaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||||||||    
T  42537076 gaaaaccggaactcgcccaaattacaatgggtaaagacatattaaccct 42537124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 293105 - 293067
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  293105 gaactcgcctaaattagagggggtaaaaacatattaacc 293067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 22714549 - 22714590
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
T  22714549 aactcgcccaatttacagggggtaagtacatattaaccctta 22714590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 25642730 - 25642782
Alignment:
Q  150 atagggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaa 201  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||||||||    
T  25642730 ataggggataaaccggaactcgcccaaattacaggggggtaaagacatattaa 25642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 15249546 - 15249597
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15249546 gggggaaaaccagaactcgcccaaattacagggggtaaagacatattaaccc 15249597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 5202782 - 5202728
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||||||||||||    
T  5202782 agggggtaaaccgaaactcgcccaaattacaagggggtaaaaacatattaaccct 5202728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 15248441 - 15248388
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||    
T  15248441 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattatccct 15248388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 25979638 - 25979588
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    |||||| ||||| ||| ||||||||||||||||||||||| |||||||||||    
T  25979638 agggggtaaaccggaa-tcgcccaaattacagggggtaaagacatattaacc 25979588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 18747998 - 18747950
Alignment:
Q  179 tacagggggtaaaaacatattaacccttatgaatattgtactgaaataata 229  Q
    |||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  18747998 tacagggggtaaaaacatattaacccttat-aat-ttttactgaaataata 18747950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 10746264 - 10746215
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    |||||||||||| |||||||||||  ||||||| ||||||||||| ||||    
T  10746264 aaaccagaactcacccaaattacaaagggtaaagacatattaacctttat 10746215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 18695400 - 18695344
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca--gggggtaaaaacatattaaccctt 206  Q
    |||||| ||||| |||||||||||||||| |  ||||||||| ||||||||||||||    
T  18695400 agggggtaaaccggaactcgcccaaattagagggggggtaaagacatattaaccctt 18695344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 42744127 - 42744168
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctta 207  Q
    ||||||||||||||||| |||||||| || ||||||||||||    
T  42744127 aactcgcccaaattacatggggtaaagacgtattaaccctta 42744168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 9555896 - 9555842
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  9555896 agggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccctt 9555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 37483391 - 37483444
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  37483391 agggggtaaaccagaactcgtccaaattacagggggtaaagacatattaaccct 37483444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 26170401 - 26170453
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  26170401 gggggaaaaccggaactcgcctaaattacagggggtaaagacatattaaccct 26170453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 38983286 - 38983339
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  38983286 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 38983339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 39014383 - 39014436
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  39014383 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 39014436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 44057193 - 44057140
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  44057193 gggggaaaaccggaactcgcccaaattacaggggggtaaatacatattaaccct 44057140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 43323842 - 43323790
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  43323842 agggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccc 43323790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 20165866 - 20165921
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    |||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||    
T  20165866 agggggaaaaccggaactcgcccaaattagaggggggtaaatacatattaaccctt 20165921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 26169250 - 26169195
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggg-gtaaaaacatattaaccctta 207  Q
    ||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||    
T  26169250 gggggaaaaccggaactcgcccaaattacaggggaataaagacatattaaccctta 26169195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 4081876 - 4081929
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattac--agggggtaaaaacatattaaccc 204  Q
    ||||||||||| |||||||||||||||||  |||||||||| ||||||||||||    
T  4081876 gggggaaaaccggaactcgcccaaattacagagggggtaaagacatattaaccc 4081929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 4086025 - 4086078
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattac--agggggtaaaaacatattaaccc 204  Q
    ||||||||||| |||||||||||||||||  |||||||||| ||||||||||||    
T  4086025 gggggaaaaccggaactcgcccaaattacagagggggtaaagacatattaaccc 4086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 44058258 - 44058304
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||    
T  44058258 aaaccggaactcgcccaaattacaggaggtaaagacatattaaccct 44058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 20164676 - 20164623
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    ||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  20164676 gggggtaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 20164623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 38982162 - 38982109
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||||||||    
T  38982162 gggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 38982109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 39013259 - 39013206
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||||||||    
T  39013259 gggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 39013206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 43325067 - 43325116
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    ||||| |||||| | |||||||||||||||||| ||||||||||||||||    
T  43325067 aaaccggaactcactcaaattacagggggtaaagacatattaacccttat 43325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 14529669 - 14529631
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  14529669 gaactcgcccaaattacatggggtaaagacatattaacc 14529631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 37124233 - 37124188
Alignment:
Q  169 tcgcccaaattacagggggtaaaaacatattaacccttatgaatatt 215  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||    
T  37124233 tcgcccaaattacagggg-taaagacatattaacccatatgaatatt 37124188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 1178388 - 1178424
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaac 202  Q
    |||||||||||||||||||||||||| |||| |||||    
T  1178388 aactcgcccaaattacagggggtaaagacatgttaac 1178424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 37482314 - 37482270
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    ||||||||||||||| |||||||| ||| |||| |||||||||||    
T  37482314 aaaccagaactcgcctaaattacaagggataaagacatattaacc 37482270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 10374185 - 10374130
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  10374185 gggggtaaaccagaactcgcccaaattacaggggttaaagacatattaacccttat 10374130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 49762635 - 49762584
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  49762635 ggggaaaaccggaactcgcccaaattacagggggtaaagacatattaaccct 49762584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 20159275 - 20159218
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaacccttat 208  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  20159275 agggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaacccttat 20159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 38132608 - 38132733
Alignment:
Q  90 tcaggggcgttttcgaaagaatctttatattacagggacagaatctaaacgaannnnnnnataggggga-aaaccagaactcgcccaaattacagggggt 188  Q
    ||||||| ||||||||||||||||| ||||| ||||||| ||||||||||          || |||| | ||||| ||||||||||||||||||||||||    
T  38132608 tcaggggtgttttcgaaagaatcttcatatttcagggacggaatctaaactt-tttttttattggggaataaaccggaactcgcccaaattacagggggt 38132706  T
Q  189 aaaaacatattaacccttatgaatatt 215  Q
    ||| ||||||||||||| || ||||||    
T  38132707 aaagacatattaaccctaataaatatt 38132733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 22058735 - 22058693
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  22058735 aactcgcccaaattacagggggtaaagacatattaacccttat 22058693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 48643344 - 48643398
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  48643344 agggggtaaaccggaactcgcctaaattacagggggtaaatacatattaaccctt 48643398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 16831059 - 16831112
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattac-agggggtaaaaacatattaaccct 205  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  16831059 gggggaaaaccggaactcgcccaaattacaagggggtaaagacatattaaccct 16831112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 17865681 - 17865738
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggg-gtaaaaacatattaacccttat 208  Q
    |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  17865681 agggggtaaaccggaactcgcccaaattacaggggagtaaatacatattaacccttat 17865738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 20160425 - 20160478
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  20160425 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccct 20160478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 16829906 - 16829854
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacaggg-ggtaaaaacatattaaccc 204  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  16829906 gggggaaaaccggaactcgcccaaattacagggaggtaaagacatattaaccc 16829854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 17864888 - 17864836
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggg-gtaaaaacatattaaccct 205  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  17864888 ggggtaaaccagaactcgcccaaattacaggggtgtaaagacatattaaccct 17864836  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 27362155 - 27362207
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  27362155 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 27362207  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 49763707 - 49763759
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  49763707 gggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 49763759  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 22059795 - 22059849
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||| | |||||| |||||||||||||||||||| ||||||||||||||    
T  22059795 agggggtaaatcggaactcacccaaattacagggggtaaagacatattaaccctt 22059849  T

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Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 46625797 - 46625851
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccctt 206  Q
    ||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||    
T  46625797 gggggaaaatcggaactcgcccaaattacaggggggtaaagacatattaaccctt 46625851  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 50961408 - 50961354
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||| ||||| |||||| || ||||||||||||||||| ||||||||||||||    
T  50961408 agggggtaaaccggaactcccctaaattacagggggtaaatacatattaaccctt 50961354  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 21813845 - 21813894
Alignment:
Q  156 ggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccc 204  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  21813845 ggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 21813894  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 38174117 - 38174064
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| |||||||||||| ||||||| |||||| |||||||||||||    
T  38174117 agggggtaaaccggaactcgcccaagttacaggaggtaaagacatattaaccct 38174064  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 46624656 - 46624603
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccct 205  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||||||||    
T  46624656 gggggaaaaccgaaactcgcccaaattacaggggggtaaagacatattaaccct 46624603  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 6668311 - 6668367
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccctta 207  Q
    |||||| ||||| |||||||||||||||||||| || |||| |||||||||||||||    
T  6668311 agggggtaaaccggaactcgcccaaattacaggtggctaaagacatattaaccctta 6668367  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 27361436 - 27361384
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggg-gtaaaaacatattaaccc 204  Q
    ||||||||| | |||||||||||||||||||||| ||||| ||||||||||||    
T  27361436 gggggaaaatcggaactcgcccaaattacaggggagtaaagacatattaaccc 27361384  T

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Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 36632261 - 36632317
Alignment:
Q  150 atagggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacccttat 208  Q
    |||||| | ||||| ||||||||||||||||||  ||||||| ||||||||||||||||    
T  36632261 atagggagtaaaccggaactcgcccaaattaca--gggtaaagacatattaacccttat 36632317  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 45459257 - 45459210
Alignment:
Q  159 aaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||| ||||||| || |||||||||||||||| ||||||||||||||    
T  45459257 aaaccggaactcgtcccaattacagggggtaaagacatattaaccctt 45459210  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21796167 - 21796113
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagg-gggtaaaaacatattaaccctt 206  Q
    ||||| ||||| ||| |||||||||||||||| ||||||| ||||||||||||||    
T  21796167 gggggtaaaccggaattcgcccaaattacaggagggtaaagacatattaaccctt 21796113  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 27903005 - 27902952
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||| ||||| |||||||||||||||| | ||||||||| |||||||||||||    
T  27903005 gggggtaaaccggaactcgcccaaattaaaggggggtaaagacatattaaccct 27902952  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 50962681 - 50962726
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatat 198  Q
    ||||| ||||| || |||||||||||||||||||||||| ||||||    
T  50962681 gggggtaaaccggatctcgcccaaattacagggggtaaagacatat 50962726  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 7378444 - 7378496
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    |||| ||||||||||||| |||||||| | ||||||||| |||||||||||||    
T  7378444 ggggtaaaccagaactcgtccaaattagaggggggtaaatacatattaaccct 7378496  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 53423 - 53372
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  53423 gggggaaaaccgaaactcgcccaaattacagggggtaaagacatattaaccc 53372  T

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Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 54511 - 54562
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaac 202  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  54511 agggggaaaaccggaactcgcccaaattacaggggggtaaagacatattaac 54562  T

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Target: scaffold0230 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 18776 - 18816
Alignment:
Q  166 aactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  18776 aactcgcccaaattacagggggtaaagacatattaaccctt 18816  T

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Target: scaffold0265 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 18964 - 18915
Alignment:
Q  156 ggaaaaccagaactcgcccaaattacag-ggggtaaaaacatattaaccc 204  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||    
T  18964 ggaaaaccggaactcgcccaaattacaggggggtaaagacatattaaccc 18915  T

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Target: scaffold0087 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 42139 - 42090
Alignment:
Q  154 ggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaacc 203  Q
    |||| ||||| ||||||||| ||||||||||||||||| |||||||||||    
T  42139 ggggtaaaccggaactcgcctaaattacagggggtaaatacatattaacc 42090  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 99652 - 99613
Alignment:
Q  165 gaactcgcccaaattacagggggtaaaaacatattaaccc 204  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  99652 gaactcgcctaaattacagggggtaaatacatattaaccc 99613  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 100914 - 100967
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattaca-gggggtaaaaacatattaaccct 205  Q
    ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||||||    
T  100914 gggggtaaaccggaactcgcctaaattacaggggggtaaagacatattaaccct 100967  T

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Target: scaffold0862 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 735 - 682
Alignment:
Q  153 gggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccctt 206  Q
    ||||| ||||| |||||| ||||||||||| | |||||| ||||||||||||||    
T  735 gggggtaaaccggaactcacccaaattacaagaggtaaagacatattaaccctt 682  T

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Target: scaffold0862; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 2154 - 2207
Alignment:
Q  152 agggggaaaaccagaactcgcccaaattacagggggtaaaaacatattaaccct 205  Q
    |||||| ||||| ||||||  | ||||||||||||||||| |||||||||||||    
T  2154 agggggcaaaccggaactcttctaaattacagggggtaaatacatattaaccct 2207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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