View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14187_low_4 (Length: 235)
Name: NF14187_low_4
Description: NF14187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14187_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 28731081 - 28730882
Alignment:
| Q |
19 |
caccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacg |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28731081 |
caccgttccagtgctcatgttcacactcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacaacgctcaggctccgtaataacg |
28730982 |
T |
|
| Q |
119 |
gtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
218 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28730981 |
gtttcagcatcctctcccttgcaatgaaggtaaaatacgaagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
28730882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 38121507 - 38121308
Alignment:
| Q |
19 |
caccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacg |
118 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || | | |||||||||||||||| |
|
|
| T |
38121507 |
caccgttccggtgctcatgttcacactcccggcgccaccgtgctccctgctattatgcgcctcatgctacgagatgcaatggtaaggctccgtaataacg |
38121408 |
T |
|
| Q |
119 |
gtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
218 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38121407 |
gtttcagcatcctctcccttgctatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgctgttgatgatctttctatattctc |
38121308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 38608616 - 38608815
Alignment:
| Q |
19 |
caccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacg |
118 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38608616 |
caccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacg |
38608715 |
T |
|
| Q |
119 |
gtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
218 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608716 |
gtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
38608815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 38793399 - 38793598
Alignment:
| Q |
19 |
caccgttccagtgctcatgttcacagtcccggcgccaccgtgcttcctgctattatgcgcctcatgctacgagacacagcgctcaggctccgtaataacg |
118 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| ||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38793399 |
caccgttccagtgctcacgttcacactcacggcgtcaccgtgctccctgctataatgcgcctcatgctacgagatgcaatgctcaggctccgtaataacg |
38793498 |
T |
|
| Q |
119 |
gtttcagcatcctctccctcgcaatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
218 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793499 |
gtttcagcatcctctcccttgcgatgaaggtaaaatacgcagagctcataactctcaacaacatgactattttcgccgttgatgatctttctatattctc |
38793598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University