View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14188_high_2 (Length: 518)
Name: NF14188_high_2
Description: NF14188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14188_high_2 |
 | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 34 - 499
Target Start/End: Original strand, 36526186 - 36526632
Alignment:
| Q |
34 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct |
133 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526186 |
gacagaaacaaatttaactcatttcatttctaatggtagttgtaatacaagatgacatataatcatgaactcgggaactagcataagataatgacgcccg |
36526285 |
T |
|
| Q |
134 |
agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg |
233 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526286 |
agctaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg |
36526385 |
T |
|
| Q |
234 |
ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagcc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36526386 |
ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctc------------- |
36526472 |
T |
|
| Q |
334 |
acattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacc |
433 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36526473 |
------tagcttcttttagacctctagcttctgcttctttgggttgtgggagacctttgtaccacgctgtcttcgctttaatgaactcccatcgatcacc |
36526566 |
T |
|
| Q |
434 |
tcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcactt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36526567 |
tcttagacacataccgaccccataacatccttaatccttaaaaattgctgcgtcgacattgcactt |
36526632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 67 - 499
Target Start/End: Original strand, 37923557 - 37923987
Alignment:
| Q |
67 |
tagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtct |
166 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37923557 |
tagtagttttaatacaagatggcatataatcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtct |
37923656 |
T |
|
| Q |
167 |
cctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||| ||||| ||| |
|
|
| T |
37923657 |
cctaatgaaacttatcttaaagttttgatgattcataagtgaaactttgcaagtattcagaattgcgccgaacatggaattggtgctgagattgcttgag |
37923756 |
T |
|
| Q |
267 |
atgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctg |
366 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37923757 |
atgccatcaaccacttgcttgcaatcaagttctatagacaccgaaggaaacctcaaggtaccaagccattttatcgcttcttttagacctcttgcttctg |
37923856 |
T |
|
| Q |
367 |
cttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctcttagacacataccgaccccataacatcctta |
466 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||| |||| |
|
|
| T |
37923857 |
cttctttgggttgtgggagacctttgtactatgttgtctttgctttaatgaactcccctcgatcccctcttagacacataccgactc--taacaaccttg |
37923954 |
T |
|
| Q |
467 |
atccttaaaaattgctgcatcgacattgcactt |
499 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |
|
|
| T |
37923955 |
ttccttaaaaattgttgcatcaacattgcactt |
37923987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 37 - 492
Target Start/End: Complemental strand, 37872260 - 37871803
Alignment:
| Q |
37 |
agaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcat---gaactcgggaactagcataagataatgacgccct |
133 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| | || ||||||||||||||||||||||||| ||||| ||||||| |||||||||| | | || |
|
|
| T |
37872260 |
agaaacatactcaactcatttcattaataacaacggtcgtaatacaagatggcatataatcatcatgaactttggaactaccataagataacgcaactct |
37872161 |
T |
|
| Q |
134 |
agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg |
233 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||| | | ||||| | |
|
|
| T |
37872160 |
gactaataagtgggaaacattatttgtttgtctcctaataaaacttatcttaaagttttgattattcagaagtgaagctttgcaaccaatcagaat-acc |
37872062 |
T |
|
| Q |
234 |
ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagcc |
333 |
Q |
| |
|
| | |||||||||| || ||| |||||||||||| ||| |||||||||||| ||||||| |||||| ||||| | |||||| | ||||||| | |
|
|
| T |
37872061 |
acgagcatggaattgatgttgagattgctagagatgtcgtaaaccacttgcttacaatcaatttcgatggacacagaaggaaaccttaatttaccaagtc |
37871962 |
T |
|
| Q |
334 |
acattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacc |
433 |
Q |
| |
|
| ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||| | | |||| | ||||| |||||| | |||| || |
|
|
| T |
37871961 |
agattgtcgcttcttttaaacctcttgcttccaccttgttgggttgtgggaggcctttaaaccaagatttcttctccctaatgtactccccttgatcccc |
37871862 |
T |
|
| Q |
434 |
tcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacat |
492 |
Q |
| |
|
||| |||||||| | ||||||||||||| ||| ||||| ||| |||| ||||| |||| |
|
|
| T |
37871861 |
tctaagacacatgctgaccccataacatacttgctccttgaaatttgccgcatcaacat |
37871803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 308
Target Start/End: Original strand, 35051609 - 35051840
Alignment:
| Q |
77 |
aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa |
176 |
Q |
| |
|
|||||||||||| |||| |||| ||| |||||||||||||| ||||||||| | | | |||||| ||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
35051609 |
aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgacgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa |
35051708 |
T |
|
| Q |
177 |
cttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtca |
275 |
Q |
| |
|
||| ||||||||||||| | | ||| ||| ||||||||| ||| ||| | ||| ||| ||||| || |||||||| ||| | |||| ||| |||| |
|
|
| T |
35051709 |
cttttcttaaagttttggtaggttc-taactgaagtttttcaaatatcaataattgcgtcaaacttgaaattggtgttgagtctcctagttatgttgtca |
35051807 |
T |
|
| Q |
276 |
accacttgcttgcaatcaagttcgatagacacc |
308 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |
|
|
| T |
35051808 |
accacttgcttgtaatcaagtttgatagacacc |
35051840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 8237434 - 8237318
Alignment:
| Q |
96 |
tcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat |
195 |
Q |
| |
|
|||||||| |||||| | ||||||||| || || ||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||||| | |
|
|
| T |
8237434 |
tcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatattatttgcttgtc--ctaatgaaacttatcttaaaattttggt |
8237337 |
T |
|
| Q |
196 |
gattcataagtgaagtttt |
214 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
8237336 |
aaattctaagtgaagtttt |
8237318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 19023346 - 19023382
Alignment:
| Q |
155 |
atttgtttgtctcctaatgaaacttatcttaaagttt |
191 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19023346 |
atttgtttgtctcctaacaaaacttatcttaaagttt |
19023382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 34 - 499
Target Start/End: Complemental strand, 23270237 - 23269773
Alignment:
| Q |
34 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct |
133 |
Q |
| |
|
|||||||||||| |||| |||||||| | |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
23270237 |
gacagaaacaaagttaattcatttcactattaatagcatttgtaatacaagatggcatataatcatgaacttgggaactagcataagataatgactccct |
23270138 |
T |
|
| Q |
134 |
agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg |
233 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| ||| |
|
|
| T |
23270137 |
agctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaagtgttcagaatagcg |
23270038 |
T |
|
| Q |
234 |
ccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagcc |
333 |
Q |
| |
|
| ||| |||| |||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| | | | || | ||||||||||| |
|
|
| T |
23270037 |
tcgaacgtggatttggtgttgagattgctagagatgtcgtcaacca-ttgcttgcaatcaagttcgatagacaccgatgtatatcttaaagtaccaagcc |
23269939 |
T |
|
| Q |
334 |
acattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacc |
433 |
Q |
| |
|
|| || ||||||||||||||||||||||||| || || |||||||| | ||||||| ||||||| |||||||| ||| | |||||||||| |||||| || |
|
|
| T |
23269938 |
actttctcgcttcttttagacctcttgcttccgcctcattgggttgagagagacctctgtaccaagctgtcttcgctctcatgaactcccctcgatcccc |
23269839 |
T |
|
| Q |
434 |
tcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcactt |
499 |
Q |
| |
|
| | | |||||| | | ||||||||| |||| ||||||||| |||| || |||||||| ||||| |
|
|
| T |
23269838 |
tgtcaagcacatatcaatcccataacaaccttgatccttaaagattgtcgcgtcgacattacactt |
23269773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 189 - 499
Target Start/End: Complemental strand, 4430817 - 4430506
Alignment:
| Q |
189 |
ttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgc |
288 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4430817 |
ttttgatgattcacaagtgaagttttgcaagtattcataatcgcgccaaacatgaaattggtgctgaagttgctagaaatgccgtcaaccacttacttgc |
4430718 |
T |
|
| Q |
289 |
aatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacc |
388 |
Q |
| |
|
||| |||||||||||||| || ||| |||||||||| ||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4430717 |
aattcagttcgatagacactttgaaaatcctcatagtatcaagccatattatcgcttattttagaccttctgcttatgcttctttgggttgtgggagact |
4430618 |
T |
|
| Q |
389 |
tttgtaccacgctgtctttgctttaatgaactcccatcgat-cacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatc |
487 |
Q |
| |
|
||||||||| | ||| ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
4430617 |
tttgtaccatgatgtatttgcttaaatgaactcctctcgatacacctcttagacacataccgaccccataacatccttgatccttaaaaattgtcgcatc |
4430518 |
T |
|
| Q |
488 |
gacattgcactt |
499 |
Q |
| |
|
||||||||||| |
|
|
| T |
4430517 |
aacattgcactt |
4430506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 34 - 306
Target Start/End: Complemental strand, 26917566 - 26917294
Alignment:
| Q |
34 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct |
133 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||| ||| ||||||||||||| ||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
26917566 |
gacaaaaacaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaacatggggacaagcataagataatgacgccct |
26917467 |
T |
|
| Q |
134 |
agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaag-ttttgatgattcataagtgaagttttgcaagtattgagaatcgc |
232 |
Q |
| |
|
| || | ||||||||| |||||| |||||||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| ||| ||||| || |
|
|
| T |
26917466 |
tgctagtagatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttgtagattc-taagtgaagctttgcaaatatcaagaatagc |
26917368 |
T |
|
| Q |
233 |
gccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagaca |
306 |
Q |
| |
|
| ||||||| |||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26917367 |
gtcaaacattgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatcaagttcgatagaca |
26917294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 4431164 - 4431011
Alignment:
| Q |
34 |
gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct |
133 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| || |||||| | | ||| |||||||||||||| |||||| |
|
|
| T |
4431164 |
gacagaaacaaacttaactcatttcaattctaataataattgtaatacaagatggcatgcaaccatgaatttgagaattagcataagataattccgccct |
4431065 |
T |
|
| Q |
134 |
agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaa |
187 |
Q |
| |
|
|| ||||||||||| ||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
4431064 |
agctaacaagtgggaaacattatttgcttctctcctaataaaacttatcttaaa |
4431011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 14965074 - 14964904
Alignment:
| Q |
107 |
ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagt |
206 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| | |
|
|
| T |
14965074 |
ggaactagtataagataatggcgccctaactaataagtgggcaacattatttgattgtctcttgatgaaacttatcttaaagttttgatgattcataaat |
14964975 |
T |
|
| Q |
207 |
gaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaac |
277 |
Q |
| |
|
|| |||||||||| || | |||| || || || ||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
14964974 |
taaattttgcaagtgtttaaaatctcgttgaatataaaattggtgctgaaattgttagagatgtcgtcaac |
14964904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 43 - 496
Target Start/End: Original strand, 29468266 - 29468719
Alignment:
| Q |
43 |
aaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaa |
142 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| | |||||||||||| |||||||| ||||| |||||| |
|
|
| T |
29468266 |
aaactcaactcatttcattaataatagtagttgtaatacaagatgacatgtaatcatgaacttgagaactagcataacataatgacatcctagctaacaa |
29468365 |
T |
|
| Q |
143 |
gtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg |
242 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || || ||||| |||||| |
|
|
| T |
29468366 |
gtatgcaacattatttgtttgtctcataatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaaatattcaggattgcgccgaacatg |
29468465 |
T |
|
| Q |
243 |
gaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcg |
342 |
Q |
| |
|
|| ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| |||| |
|
|
| T |
29468466 |
gacctggtgctaaagttgctagagatgcaatcaactacttgcttgcaatcaagttcgatagataccgaaggaaacctcaaagtaccaagccactttattt |
29468565 |
T |
|
| Q |
343 |
cttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctcttagaca |
442 |
Q |
| |
|
||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| | |||||| ||| ||||||||||| ||| | |||||||| || |
|
|
| T |
29468566 |
ctttttttagacctcgtgctttcgcttctttaggttgtgggagacctttataccaagttgtcttcgctccaatgaactcccctcgcacccctcttaggca |
29468665 |
T |
|
| Q |
443 |
cataccgaccccataacatccttaatcctt-aaaaattgctgcatcgacattgca |
496 |
Q |
| |
|
||| | || ||||||||||| || |||||| ||||||| |||| ||||||||||| |
|
|
| T |
29468666 |
cattctga-cccataacatcattgatccttaaaaaattactgcgtcgacattgca |
29468719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 8e-56; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 49 - 391
Target Start/End: Complemental strand, 9252603 - 9252262
Alignment:
| Q |
49 |
aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc |
148 |
Q |
| |
|
|||||||||||| | ||| | ||| |||||| |||||| ||||||||||| ||| | ||||||| |||||||||| ||| || | |||||| |||| |
|
|
| T |
9252603 |
aactcatttcatatataacaacagtcgtaatataagatgacatataatcattaacatgagaactaggataagataataacgtccaggctaacaaatgggt |
9252504 |
T |
|
| Q |
149 |
aacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattg |
248 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||| ||||| | ||| ||||| |||| |||||| ||||| |
|
|
| T |
9252503 |
aacattattcgtttgtcttttaatgaaacttatgttaaagttttgatgattcaaaagtgaagctttgccaccattcagaatagcgctgaacatgaaattg |
9252404 |
T |
|
| Q |
249 |
gtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttctt |
348 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||| |||||||||| |||||||| | |||||||||| | || ||| ||| |||||||||||| |
|
|
| T |
9252403 |
gtgcttagattgctagagatgccgtcaaccacttgcttacaatcaagtttgatagaca-cgaagaaaacctcaaattatcaaaccaatttatcgcttctt |
9252305 |
T |
|
| Q |
349 |
ttagacctcttgcttctgcttctttgggttgtgggagaccttt |
391 |
Q |
| |
|
||| | |||||||||| | || |||| |||||||| |||||| |
|
|
| T |
9252304 |
ttaaatctcttgcttccacctcgttggattgtgggataccttt |
9252262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 247 - 499
Target Start/End: Original strand, 40728311 - 40728557
Alignment:
| Q |
247 |
tggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttc |
346 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| | | |||||||| |||||||| ||| || ||||||| |
|
|
| T |
40728311 |
tggtgctgaagttgctagagatgtcgtcaaatacttgcttgcaatcaagttcgatagacaacgaagtaaacctcaaagtaccaaaccattttgtcgcttc |
40728410 |
T |
|
| Q |
347 |
ttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctcttagacacata |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| | ||||| | |||||| ||| ||||||||| || |||||||| ||||| |
|
|
| T |
40728411 |
ctttagacctcttgcttctgcttctttgggttattggagacctgtataccaagatgtcttggctctaatgaact---at------cctcttaggcacatt |
40728501 |
T |
|
| Q |
447 |
ccgaccccataa---catccttaatccttaaaaattgctgcatcgacattgcactt |
499 |
Q |
| |
|
|||||||||||| | ||||| |||||||||||||| |||||| |||||| |||| |
|
|
| T |
40728502 |
ccgaccccataaccgcctccttgatccttaaaaattgttgcatctacattgtactt |
40728557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 501
Target Start/End: Complemental strand, 37490999 - 37490609
Alignment:
| Q |
112 |
tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagt |
211 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
37490999 |
tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttgatgattcagtagtgaagc |
37490900 |
T |
|
| Q |
212 |
tttgcaagtattgagaatcgcgccaa-acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccct |
310 |
Q |
| |
|
||||||| ||| | ||| | ||| ||||| ||||||| ||| |||||||||||| ||||||| | |||||| |||||||||| |||||||| | |
|
|
| T |
37490899 |
tttgcaatcattcaaaataatgtcaacacatgaaattggtattgagattgctagagatgtcgtcaacgatttgcttacaatcaagtttgatagacaacga |
37490800 |
T |
|
| Q |
311 |
ggaaaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgct |
410 |
Q |
| |
|
| |||||||| | ||||||| || ||||||||||||||| |||| ||||||| | | |||| |||||| || ||||| || | | |||||| ||| |
|
|
| T |
37490799 |
aggaaacctcaaattaccaagacaatttatcgcttcttttaaaccttttgcttcctccacgttggattgtggaaggcctttaaacgaagttgtcttcgct |
37490700 |
T |
|
| Q |
411 |
ttaatgaactcccatcgatcacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcactttg |
501 |
Q |
| |
|
|||| |||||| ||||||| | || |||| ||| || ||||||||||||||| || |||||||||| ||||| | |||||| |||| |
|
|
| T |
37490699 |
ccaatgtactcccctcgatcatcgctaagacccatgttgatcccataacatccttactctttaaaaattgtcgcatctatattgcattttg |
37490609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 337 - 499
Target Start/End: Complemental strand, 10786022 - 10785860
Alignment:
| Q |
337 |
ttatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctct |
436 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||||||||||||| ||||||||||| | |||||| ||| |||||||||||| |||||| ||||| |
|
|
| T |
10786022 |
ttatcgtttcttttagacctcttgcttttacttctttgggttgtgggatgcctttgtaccaagttgtcttcgctctaatgaactcccctcgatcccctct |
10785923 |
T |
|
| Q |
437 |
tagacacataccgaccccataacatccttaatccttaaaaattgctgcatcgacattgcactt |
499 |
Q |
| |
|
| ||||||||||| ||||||||| |||| ||||||||||||| || ||| ||||| ||||| |
|
|
| T |
10785922 |
caaacacataccgatcccataacaaccttgttccttaaaaattgttgtatcaacattacactt |
10785860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 152 - 457
Target Start/End: Original strand, 13018965 - 13019258
Alignment:
| Q |
152 |
attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtg |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| ||| || ||| ||||| |||||||||||||||| | |
|
|
| T |
13018965 |
attatttgattgtctcctaatgaaacttatcttaaaattttgatgattcagatgtgaagctttataaccattaagaatagcgccaaacatggaatgg--- |
13019061 |
T |
|
| Q |
252 |
ctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttctttta |
351 |
Q |
| |
|
||||||||||||| | ||||||| ||| |||| |||||||||||||||| ||||| ||| | | |||| | | ||||||||||||||| |
|
|
| T |
13019062 |
-----gttgctagagatggcatcaacca----cttacaattaagttcgatagacaccgaagaaaatctcgaattgccaaacgaatttatcgcttctttta |
13019152 |
T |
|
| Q |
352 |
gacctcttgcttctgcttctttgggttgtgggagacctttgtaccacgctgtctttgctttaatgaactcccatcgatcacctcttagacacataccgac |
451 |
Q |
| |
|
||| ||||||||||| || |||| ||||||||| ||||| |||| | |||||| || |||||||||||| || ||| ||||| |||| ||| ||||| |
|
|
| T |
13019153 |
aaccacttgcttctgcctcgttggattgtgggaggcctttaaaccaagttgtcttcgccctaatgaactcccctcaatcccctctaagacgcatgccgac |
13019252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 19920932 - 19920791
Alignment:
| Q |
77 |
aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | |||||||||||||| ||| | |||||| ||| |||| |||||| |||| ||||||||||| |
|
|
| T |
19920932 |
aatacaagatggcatataatcatgaatgtgggaactggtataagataatgacgtccttgctaacaaatggcaaacactatttgcttgtttcctaatgaaa |
19920833 |
T |
|
| Q |
177 |
cttatcttaaagttttgat-gattcataagtgaagttttgcaa |
218 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
19920832 |
cctagcttaaagttttgatagattc-taagtgatgttttgcaa |
19920791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 352
Target Start/End: Complemental strand, 8295281 - 8294968
Alignment:
| Q |
39 |
aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata |
138 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | |||||||||||| |||| |||||||| | | || |||||||||||||| | | || |
|
|
| T |
8295281 |
aaacaaacttaactcatttcattattaatagcaatctcaatacaagatggtatatgttcatgaacgtagagattaacataagataatgacaaatttgtta |
8295182 |
T |
|
| Q |
139 |
acaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaa |
237 |
Q |
| |
|
||| || |||||| ||||| |||||||| |||| |||||||||||||||||||| ||||| ||||||||| ||||||| ||| |||| |||||| |
|
|
| T |
8295181 |
gcaaatgagcaacactatttatttgtctcttaataaaacttatcttaaagttttggcagattc-taagtgaagctttgcaaatatcaagaacaacgccaa |
8295083 |
T |
|
| Q |
238 |
acatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccacat |
337 |
Q |
| |
|
||||| ||||| || ||| | || ||||||| || ||||||||||||||||||||||||||||||| | || | |||||| | |||||||| | |
|
|
| T |
8295082 |
acatgaaattgatgttgagtccccaagctatgccgtaaatcacttgcttgcaatcaagttcgatagacaccttagatagactcatacttccaagccattt |
8294983 |
T |
|
| Q |
338 |
tatcgcttcttttag |
352 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
8294982 |
tatcgcctcttttag |
8294968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 24588542 - 24588736
Alignment:
| Q |
110 |
actagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat-gattcataagtga |
208 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||||||| |||||| |||| | ||||| ||||||| |||||||| | ||||| ||||||| |
|
|
| T |
24588542 |
actagcataagataatgacgccctttctagtgaatgggcaacactatttgattgtgttctaataaaacttac----aagttttgttagattc-taagtga |
24588636 |
T |
|
| Q |
209 |
agttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacacc |
308 |
Q |
| |
|
|| ||| ||| ||| ||||| ||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24588637 |
agctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgcttgcaatcaagttcgatagacacc |
24588736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 13923064 - 13923026
Alignment:
| Q |
155 |
atttgtttgtctcctaatgaaacttatcttaaagttttg |
193 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
13923064 |
atttgcttgtttcctaatgaaacttatcttaaagttttg |
13923026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 36359734 - 36359621
Alignment:
| Q |
78 |
atacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaac |
177 |
Q |
| |
|
|||||||||||||||| ||||||| | | || |||||||| || ||||| ||||| | |||||| | || ||||| |||| ||||| || || |||| |
|
|
| T |
36359734 |
atacaagatggcatatgatcatgacattgagacctagcatatgacaatgaagcccttgctaacaaattagccacattgtttgcttgtcgtctgataaaac |
36359635 |
T |
|
| Q |
178 |
ttatcttaaagttt |
191 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36359634 |
ttatcttaaagttt |
36359621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 90 - 493
Target Start/End: Original strand, 18603 - 18998
Alignment:
| Q |
90 |
atataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagt |
189 |
Q |
| |
|
||||||||||||||| ||| ||||||| || ||||||| | | | |||||||||||||| ||||||| ||| | || ||||||||||| |||| || | |
|
|
| T |
18603 |
atataatcatgaactttggagctagcatgaggtaatgacaacttggctaacaagtgggcaaaattatttctttttttcttaatgaaacttgtcttcaaat |
18702 |
T |
|
| Q |
190 |
tttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgca |
289 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||| | ||| || |||| ||||||||||| ||| || ||||| ||| ||||||||||||| || || |
|
|
| T |
18703 |
tttgatgattcagaagtgaagctttgcaaccattcaaaatagc-ataaacgtggaattggtgttgagatttctagatatgtcgtcaaccacttgtttaca |
18801 |
T |
|
| Q |
290 |
atcaagttcgatagacaccctggaaaacctcatagtaccaagccacattatcgcttcttttagacctcttgcttctgcttctttgggttgtgggagacct |
389 |
Q |
| |
|
||||||||| ||||||||| | |||||| | | ||||||||| ||||||||||| ||||||||||| || || |||||||||||||||||| |
|
|
| T |
18802 |
atcaagttcaatagacaccgacggaaaccttaaattaccaagcc-------cgcttcttttaaacctcttgcttacgcctcattgggttgtgggagacct |
18894 |
T |
|
| Q |
390 |
ttgtaccacgctgtctttgct-ttaatgaactcccatcgatcacctcttagacacataccgaccccataacatccttaatccttaaaaattgctgcatcg |
488 |
Q |
| |
|
|| |||| | |||||| ||| |||| |||||| | |||| ||||| |||||||| |||||| | |||||||||| ||||| ||||||| || |||| |
|
|
| T |
18895 |
ttaaaccaagttgtcttcgctcccaatgtactccccttgatcccctctaagacacatgtcgacccaacaacatccttactcctt-aaaattgttgtatcg |
18993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 5461048 - 5460873
Alignment:
| Q |
76 |
taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa |
175 |
Q |
| |
|
|||||||||||||||||| |||||||| | | | |||||||||||||||||| | |||| |||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
5461048 |
taatacaagatggcatatgatcatgaatttgaggactagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaa |
5460949 |
T |
|
| Q |
176 |
acttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtg |
251 |
Q |
| |
|
|||||||||||||||||| | |||| ||| |||| ||||||||| | ||||| ||||| ||||||||||||||| |
|
|
| T |
5460948 |
acttatcttaaagttttggtaaattctcaag-gaagctttgcaagtctctagaatagcgccgaacatggaattggtg |
5460873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 115 - 364
Target Start/End: Complemental strand, 28284031 - 28283782
Alignment:
| Q |
115 |
cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagtttt |
214 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
28284031 |
cataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcagaagtgaagctta |
28283932 |
T |
|
| Q |
215 |
gcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaa |
314 |
Q |
| |
|
||| ||| ||||| | | ||||| |||| ||| ||| |||||||||||| | ||| ||||||||| | ||||||||| |||||||| | | |
|
|
| T |
28283931 |
gcagccattcagaatagtgttgaacatagaatcagtgttgagattgctagagatgtcatcaggcacttgcttacgatcaagttcaatagacacagaagga |
28283832 |
T |
|
| Q |
315 |
aacctcatagtaccaagccacattatcgcttcttttagacctcttgcttc |
364 |
Q |
| |
|
||||||| | ||| |||||| |||| |||||||||| | | |||||||| |
|
|
| T |
28283831 |
aacctcaaattactaagccaatttattgcttcttttaaaacccttgcttc |
28283782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 29443918 - 29443757
Alignment:
| Q |
39 |
aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata |
138 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| | ||||||||| ||| ||||||||||||||| | |||| | ||||||||||| | ||||| | || |
|
|
| T |
29443918 |
aaacaaactcaactcatttcattaataacagtaatcgtaatacaatatgacatataatcatgaacatgagaacaaacataagataataatgcccttgcta |
29443819 |
T |
|
| Q |
139 |
acaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttgatgattca |
201 |
Q |
| |
|
||||||| ||| ||||||| |||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
29443818 |
acaagtgaacaaatttatttgcttgtct--aaatgaaaacttatcttaaagttttgatgattca |
29443757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 43000413 - 43000554
Alignment:
| Q |
76 |
taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa |
175 |
Q |
| |
|
|||| ||||||| |||||||||||||||| || || ||||||||||||||||| || ||| ||||| || | || ||| |||| |||||||||||| || |
|
|
| T |
43000413 |
taatgcaagatgacatataatcatgaacttggaaattagcataagataatgacaccttagcaaacaaatgagtaatattgtttgcttgtctcctaataaa |
43000512 |
T |
|
| Q |
176 |
acttatcttaaagttttgatgattcataagtgaagttttgca |
217 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||| |||||| |
|
|
| T |
43000513 |
acttatattaaagttttgattttttttaagtgaagctttgca |
43000554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 43382010 - 43381919
Alignment:
| Q |
79 |
tacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctccta |
170 |
Q |
| |
|
|||||||| | |||| |||||||| || ||||||||||||||||||||| ||| | |||||| || |||||| ||||||||||||||||| |
|
|
| T |
43382010 |
tacaagatagaatatgatcatgaatgtggaaactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtctccta |
43381919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 43381836 - 43381799
Alignment:
| Q |
270 |
ccgtcaaccacttgcttgcaatcaagttcgatagacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43381836 |
ccgtcaaccacttgcttgcaatcaagttcgatagacac |
43381799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 29135189 - 29135150
Alignment:
| Q |
148 |
caacattatttgtttgtctcctaatgaaacttatcttaaa |
187 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
29135189 |
caacattatttatttgtctcctaacgaaacttatcttaaa |
29135150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 35762849 - 35762788
Alignment:
| Q |
149 |
aacattatttgtttgtctcctaatgaaactta-tcttaaagttttgatgattcataagtgaa |
209 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||| ||||||| |
|
|
| T |
35762849 |
aacattatttgtttgtcccataataaaatttaatattaaagttttgatgattcacaagtgaa |
35762788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 39079761 - 39079649
Alignment:
| Q |
77 |
aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa |
176 |
Q |
| |
|
|||||||||| | |||| |||||||| | | |||||||||||||||||||| |||| |||||| || | ||||||||| ||| || |||| ||| |
|
|
| T |
39079761 |
aatacaagatagtatatgatcatgaatttgaaaactagcataagataatgactttctagctaacaaatgaacgacattatttatttttcgtgtaataaaa |
39079662 |
T |
|
| Q |
177 |
cttatcttaaagt |
189 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39079661 |
cttatcttaaagt |
39079649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 9738634 - 9738720
Alignment:
| Q |
108 |
gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttg |
193 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||| || ||||||||||||| ||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
9738634 |
gaactaacataagataatgacgctctagctaacaaatgagcaacattatttggttgtcacctaatgaaaaaatatcttaaagttttg |
9738720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 46107485 - 46107349
Alignment:
| Q |
49 |
aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc |
148 |
Q |
| |
|
||||||||||||| ||||| || || ||||||| |||||||| || |||| | ||||||| ||||| |||||||||| |||| |||||| || || |
|
|
| T |
46107485 |
aactcatttcattagtaataactgtcgtgatacaagttggcatatgattgtgaatttaggaactaacataatataatgacgctctagctaacaaatgagc |
46107386 |
T |
|
| Q |
149 |
aacattatttgtttgtctcctaatgaaacttatctta |
185 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
46107385 |
aacattatttacttgtcacctaatgaaacgtatctta |
46107349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 21330778 - 21330833
Alignment:
| Q |
137 |
taacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt |
192 |
Q |
| |
|
|||||| || |||||||||||| ||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21330778 |
taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagtttt |
21330833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 43059148 - 43059104
Alignment:
| Q |
150 |
acattatttgtttgtctcctaatgaaacttatcttaaagttttga |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
43059148 |
acattatttgtttgtcttataatgaaacttatcttaaaattttga |
43059104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 35529008 - 35529090
Alignment:
| Q |
109 |
aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt |
192 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| || ||||||| ||||||||||| | ||||||||||||| ||||| |||| |
|
|
| T |
35529008 |
aactaacataagataatgacattctagctaacaa-tgagcaacatcatttgtttgtcgcttaatgaaacttattttaaaatttt |
35529090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 47798396 - 47798438
Alignment:
| Q |
151 |
cattatttgtttgtctcctaatgaaacttatcttaaagttttg |
193 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
47798396 |
cattatttatttgtctcttaataaaacttatcttaaagttttg |
47798438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 350
Target Start/End: Complemental strand, 17571309 - 17571196
Alignment:
| Q |
237 |
aacatggaattggtgctgaagttgctagagatgccgtcaaccacttgcttgcaatcaagttcgatagacaccctggaaaacctcatagtaccaagccaca |
336 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||| |||||||||| | ||| || | |||||||||||| ||| |||||||||| | ||| ||| | |
|
|
| T |
17571309 |
aacatgtaattggtgttgagattgctagagatgtcgtcaaccacatacttacagttaagttcgatagagaccgaagaaaacctcaaattactaagttagt |
17571210 |
T |
|
| Q |
337 |
ttatcgcttctttt |
350 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17571209 |
ttatcgcttctttt |
17571196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 46016235 - 46016324
Alignment:
| Q |
106 |
gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat |
195 |
Q |
| |
|
|||||| | ||||||||||||| || ||| |||||| || |||||||| |||| ||||| | |||||||||||| ||| ||||||||| |
|
|
| T |
46016235 |
gggaacaaacataagataatgatgctctaactaacaaatgagcaacattgtttgattgtcctcaaatgaaacttatattatagttttgat |
46016324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University