View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14188_low_3 (Length: 494)
Name: NF14188_low_3
Description: NF14188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14188_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 6942755 - 6942439
Alignment:
| Q |
19 |
atggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6942755 |
atggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtgtttatacacaagttgtgcattgtaaacattactctttctctcataata |
6942656 |
T |
|
| Q |
119 |
aaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcattatttgcgtttactgtttctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
6942655 |
aaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattatttgcgtttactgtttctt |
6942556 |
T |
|
| Q |
219 |
taannnnnnnnnnnnngtaccagtttgctgttctaacatacttatgggtaacatgccatgttaacattggtagggaaaccaatgtaaaatgttacattcc |
318 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6942555 |
taattttttgatttttgaaccagtttgctgttctaacatacttatgggtaacatgccatgttaacattggtagggaaaccaatgtaaactgttacattcc |
6942456 |
T |
|
| Q |
319 |
tcttaaatgtttttctt |
335 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6942455 |
tcttaaatgtttttctt |
6942439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 6939580 - 6939399
Alignment:
| Q |
19 |
atggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataata |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6939580 |
atggcgactgggggtacggttcacggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactctttctctcataata |
6939481 |
T |
|
| Q |
119 |
aaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||| |
|
|
| T |
6939480 |
aaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggctgaacttcgttaccaaacatcgtgtgttcattat |
6939399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 6787963 - 6788160
Alignment:
| Q |
18 |
aatggcgactgggggtacggttcagggttgatgttgtaatctggacaatagttttta----tacacacgttgtgcattgtaaacattactatttctctca |
113 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||| | |||| |||| |
|
|
| T |
6787963 |
aatggcgactgggggtatggttcaggggtgatgttgtaatctggacaatagtgtttaattatacacaagttgtgcattgtaaaccttaatctttcactca |
6788062 |
T |
|
| Q |
114 |
taataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcattatttgcgtttact |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
6788063 |
taataaaaaggaactgcagcttctctgcagtcggagatgtaggcaatattggccgaacttcgttaccaaacatcgtgtgtttattatttgcgtttact |
6788160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 8467207 - 8467044
Alignment:
| Q |
20 |
tggcgactgggggtacggttcagggttgatgttgtaatctggacaatagtttttatacacacgttgtgcattgtaaacattactatttctctcataataa |
119 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||| | | |||| |||| | | |||||||| ||||||| || | |||| | |||||| |
|
|
| T |
8467207 |
tggcgacagggggtacggttctgggatgatgttgtaatcagaattgtagtatttaagtataagttgtgcactgtaaaccctaatctttcattgataatac |
8467108 |
T |
|
| Q |
120 |
aaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
183 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8467107 |
aaaggaactgcagcttctctacagtcggagacgtaggcaatattggccgaacttcgttaccaaa |
8467044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 395
Target Start/End: Original strand, 6788244 - 6788323
Alignment:
| Q |
321 |
ttaaatgtttttcttcgctctattgttctctaattatgttg----ttgtaatcatctctattcagt-ttacaaatcttgt |
395 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
6788244 |
ttaaatctttttcttcgatctattgttctctaattgtgttgtaaattgtaatcatctctatccagtaatacaaatcttgt |
6788323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 28362649 - 28362734
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgttcatt |
198 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||| |||||||| ||| |||||||||| |
|
|
| T |
28362649 |
ataatacaaaggaactgcagctgctctgcagtctgagacataggcaaaattggttaaactttgttaccaaacatcgtgtgttcatt |
28362734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 6522163 - 6522105
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaac |
171 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6522163 |
ataatagaaaggtactacagctgctctgcagtctgagacgtaggcacaattggctgaac |
6522105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 1569745 - 1569806
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttc |
174 |
Q |
| |
|
|||||| ||| ||||||||| | || ||||||||||||||||||||| |||| |||||||| |
|
|
| T |
1569745 |
ataatacaaatgaactgcagttcctttgcagtcggagacgtaggcaaaattgtctgaacttc |
1569806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 48681555 - 48681625
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
183 |
Q |
| |
|
|||||| |||||||||||||| ||||||| ||||||||| || ||| ||||| |||||||||||||||| |
|
|
| T |
48681555 |
ataatataaaggaactgcagccactctgcattcggagacgcagacaaaattggccgaacttcattaccaaa |
48681625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 6683750 - 6683704
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaa |
159 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
6683750 |
ataatacaaaggaactgcagctgctctgcagtcgaagatataggcaa |
6683704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 33720175 - 33720249
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctc----tgcagtcggagacgtaggcaatattggttgaacttcattaccaaa |
183 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||| ||| |||| |
|
|
| T |
33720175 |
ataatagaaaggaactgcagctgctcgctctgcagtcggagatgtaggcaaaattggccgaacttcgttatcaaa |
33720249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 34564829 - 34564910
Alignment:
| Q |
113 |
ataataaaaaggaactgcagctgctctgcagtcggagacgtaggcaatattggttgaacttcattaccaaatatcatgtgtt |
194 |
Q |
| |
|
|||||| |||||| || || | ||||| ||||||||||||||||||| |||| ||||||| |||||||| ||| |||||| |
|
|
| T |
34564829 |
ataatagaaaggacctacaccagctctacagtcggagacgtaggcaaatttggccgaacttcgttaccaaacatcgtgtgtt |
34564910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University