View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14188_low_7 (Length: 430)
Name: NF14188_low_7
Description: NF14188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14188_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 125 - 414
Target Start/End: Complemental strand, 29298599 - 29298310
Alignment:
| Q |
125 |
acctaagcatatgcaaactgataacttttatgaatacattgtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttaga |
224 |
Q |
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| T |
29298599 |
acctaagcatatgcaaactgataacttttatgaatacattgtataaaatatttatcatggatatattgaatgaatacaagagtaagaatagtaatttaga |
29298500 |
T |
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| Q |
225 |
cttctattttctgttccttttattactttatcaatatgacttctgcaactgttgatctgcaatgttacagctagttctatctttgcattgccacacnnnn |
324 |
Q |
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| T |
29298499 |
cttctattttctgttccttttattactttatcaatatgacttctgcaactgttgatctgcaatgttacagctagttctatctttgcattgccacactttt |
29298400 |
T |
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| Q |
325 |
nnnncttttccttaattttaaagcttttaatcaggcggttcaaaaatggttaaacttcttgccattgaagcatgatttcaatgaagctag |
414 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29298399 |
ttttcttttccttaatcttaaaggttttaatcaggcggttcaaaaatggttaaacttcttgccattgaagcatgatttcagtgaagctag |
29298310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29298763 - 29298636
Alignment:
| Q |
1 |
atcccaaagcaggactggaatatataggaccaggacattggttccataagttccttttatgctcgattttagtctacaattagattaatttctaannnnn |
100 |
Q |
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| T |
29298763 |
atcccaaagcaggacaggaatatataggaccaggacattggttccataagttccttttatgctcgattttagtctacaattagattaatttctaattttt |
29298664 |
T |
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| Q |
101 |
nncaagcacctacagtgtaattacacct |
128 |
Q |
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| T |
29298663 |
ttcaagcacctacagtgtaattacacct |
29298636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 29316625 - 29316558
Alignment:
| Q |
347 |
gcttttaatcaggcggttcaaaaatggttaaacttcttgccattgaagcatgatttcaatgaagctag |
414 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| |
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| T |
29316625 |
gcttttaagcaggcggttcaaaaatggttaagtttcttgccattgaagcaagatttcgacgaagctag |
29316558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 42285620 - 42285673
Alignment:
| Q |
361 |
ggttcaaaaatggttaaacttcttgccattgaagcatgatttcaatgaagctag |
414 |
Q |
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|||| ||| ||||||| ||||||||||| |||||||||||||||| |||||||| |
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| T |
42285620 |
ggttaaaagatggttatacttcttgccactgaagcatgatttcaaggaagctag |
42285673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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