View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14189_high_3 (Length: 294)
Name: NF14189_high_3
Description: NF14189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14189_high_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 53491849 - 53492129
Alignment:
| Q |
17 |
ggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatgccaaagatgcatatattaaggcagattcctaaaataacta- |
115 |
Q |
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| T |
53491849 |
ggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagatgccaaagatgcatatattaaggcagattcctaaaataactac |
53491948 |
T |
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| Q |
116 |
--gacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataa |
213 |
Q |
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| T |
53491949 |
ttgacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataa |
53492048 |
T |
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| Q |
214 |
gcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaatatccaagactaattcacc |
294 |
Q |
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| T |
53492049 |
gcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaatatccaagactaattcacc |
53492129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 57 - 252
Target Start/End: Original strand, 53499888 - 53500085
Alignment:
| Q |
57 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgca |
153 |
Q |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgca |
53499987 |
T |
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| Q |
154 |
aaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaa |
252 |
Q |
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| T |
53499988 |
aaagcaccgtgaccttcttgccaaagaaactcacgactcctgcaatcaaaatttgtataagcaccc-aaaatgggactatgaacaagtttcaatataaa |
53500085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 16071131 - 16071337
Alignment:
| Q |
75 |
gccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttct |
171 |
Q |
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| T |
16071131 |
gccaaatatgcaaatattaaggcaaattcctaaaacaactacttgatggaatacctctgcatctgcttcttcctcagaagcaaaagcactgtgtccttct |
16071230 |
T |
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| Q |
172 |
tgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaa--caagttccaatataaagtagatgtgcatgataa |
269 |
Q |
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| T |
16071231 |
tgccaaagaaactcacgactcctgcaatcaaaatttgtctaa-ctgcttaaaat-atactatatatgcaagttctaatacaaagtagatgtgcgtgataa |
16071328 |
T |
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| Q |
270 |
aaacaatat |
278 |
Q |
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| T |
16071329 |
aaacaatat |
16071337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 275
Target Start/End: Complemental strand, 45354343 - 45354189
Alignment:
| Q |
119 |
ggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcacc |
218 |
Q |
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|||||||||||| || |||||| |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||| | ||||| ||| |
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| T |
45354343 |
ggaatacctctgtatctgcttcctcctttgttgcaaaagcagtgtgtccttcttgccaaagaaactcacgactcctgcaattaaaattggtataagtacc |
45354244 |
T |
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| Q |
219 |
ctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaa |
275 |
Q |
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| T |
45354243 |
ctgaaat-ggactatacaaaagtgcc-atacgaagtaaatgtacatgataaaaacaa |
45354189 |
T |
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