View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14189_low_1 (Length: 598)
Name: NF14189_low_1
Description: NF14189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14189_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 117 - 582
Target Start/End: Complemental strand, 326373 - 325910
Alignment:
| Q |
117 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
216 |
Q |
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| T |
326373 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttatagattctttttcagcacactctttatatttgaaatttatgtcggtctcatcatt |
326274 |
T |
|
| Q |
217 |
ttgagaataggtctcaatcaattaaaaatcgagtccaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326273 |
ttgagaataggtctcaatcaattaaaaatcgagttcaaatgatttagtgagactcatgtgaatttccttgaataatagagtgtgttatttgcgttactct |
326174 |
T |
|
| Q |
317 |
tttgattatgtttatttagnnnnnnnnnnatattatgtttagatgttgctctttttgcatatcttaatcatttttgaaagctgggttcgggtattttctc |
416 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
326173 |
tttgattatgtttatttagttttttttt--tattatgtttagatgttgctccttttgcatatcttaatcatttttgaaagctgggttcgggtattttctc |
326076 |
T |
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| Q |
417 |
ttgatggagttttgagaaagttttttgttagttagaaatcagtggtcaacttttttgtcattatggtactaactaattaaaattagctagagtatagtgt |
516 |
Q |
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| T |
326075 |
ttgatggagttttgagaaagttttttgttagttagaaatcagtggtcaacttttttgtcattatggtactaactatttaaaattagctagagtatagtgt |
325976 |
T |
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| Q |
517 |
tttcctttcttaaagtgtttttccacaatccctttttactctttacgtctactttcacgtcataac |
582 |
Q |
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| T |
325975 |
tttcctttcttaaagtgtttttccacaatccctttttactctttacgtctactttcacgtcataac |
325910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 531016 - 531176
Alignment:
| Q |
3 |
ctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccataaggaggagcctccttaaggagtgggctgtt |
102 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
531016 |
ctgggagctcaaaaacctgggtagcttaaagaaagtataaacatatagatccgtgcatgggaaaaccatgaggaagagcctccttaaggagtgggctgtt |
531115 |
T |
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| Q |
103 |
ctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgcttata |
163 |
Q |
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| T |
531116 |
ctaaattattattcaatgctcctcggggagtgcaatgccggaagcactcgttttgcttata |
531176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 517766 - 517924
Alignment:
| Q |
1 |
gtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccataaggaggagcctccttaaggagtgggctg |
100 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| || |||||||| |||| ||||||| || || |||||||| |
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| T |
517766 |
gtctgggagttcaaaaacctgggtagcttaa-gaaagtattgaccaggagatccatgcaaggaaaaaccatgaggaagagcctctttcagaagtgggcta |
517864 |
T |
|
| Q |
101 |
ttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgctt |
160 |
Q |
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||||||||| | |||||||||||||| ||||||||||| |||||||||| |||||||| |
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| T |
517865 |
ttctaaatttgtagtcaatgctcctccaagagtgcaatgcaagaagcactcattttgctt |
517924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 518075 - 518115
Alignment:
| Q |
295 |
agtgtgttatttgcgttactcttttgattatgtttatttag |
335 |
Q |
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||||||||||| || ||||||||||||||||| |||||||| |
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| T |
518075 |
agtgtgttattggcattactcttttgattatgcttatttag |
518115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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