View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14189_low_3 (Length: 324)

Name: NF14189_low_3
Description: NF14189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14189_low_3
NF14189_low_3
[»] chr2 (19 HSPs)
chr2 (1-306)||(9292332-9292637)
chr2 (26-299)||(9283618-9283891)
chr2 (1-273)||(9357587-9357856)
chr2 (18-265)||(9316449-9316696)
chr2 (18-299)||(9329020-9329301)
chr2 (29-273)||(10353553-10353797)
chr2 (20-278)||(9321399-9321657)
chr2 (26-274)||(9060588-9060836)
chr2 (120-294)||(9275044-9275218)
chr2 (127-273)||(10348312-10348458)
chr2 (26-90)||(10336273-10336337)
chr2 (26-84)||(8573142-8573200)
chr2 (127-196)||(10372391-10372460)
chr2 (224-287)||(7115092-7115155)
chr2 (28-90)||(10372301-10372363)
chr2 (26-95)||(7115271-7115340)
chr2 (33-90)||(10348227-10348284)
chr2 (1-85)||(9274916-9275000)
chr2 (132-273)||(8572959-8573100)
[»] chr3 (1 HSPs)
chr3 (26-278)||(37462927-37463179)
[»] chr4 (1 HSPs)
chr4 (28-273)||(26575304-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (26-90)||(4912-4976)
scaffold0667 (138-273)||(5018-5153)
[»] chr8 (2 HSPs)
chr8 (26-88)||(41966362-41966424)
chr8 (140-265)||(41966185-41966310)
[»] chr1 (4 HSPs)
chr1 (27-88)||(29467429-29467489)
chr1 (27-85)||(29452955-29453013)
chr1 (27-84)||(29442970-29443027)
chr1 (31-88)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 9292332 - 9292637
Alignment:
Q  1 caaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9292332 caaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccggcgcg 9292431  T
Q  101 atcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtta 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9292432 atcaatgttttcagactcgagaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgtta 9292531  T
Q  201 ggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgataggaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292532 ggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgataggaa 9292631  T
Q  301 cggtct 306  Q
    ||||||    
T  9292632 cggtct 9292637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 9283891 - 9283618
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 125  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | ||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatg 9283792  T
Q  126 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt-gaagcag 224  Q
    |||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||  | | | |||  ||||||||  |||||     
T  9283791 ttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagca- 9283693  T
Q  225 atttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgatagga 299  Q
    ||| ||| |||| | |||||||||||||||||||||||||||||||||| | ||| |||| || |||||| ||||    
T  9283692 attgggccattgtagatggcgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaagga 9283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 9357587 - 9357856
Alignment:
Q  1 caaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||     
T  9357587 caaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgcc 9357683  T
Q  101 atcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtta 200  Q
     ||||||||   |||    |||||||||||||||| ||||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || |||||||||     
T  9357684 gtcaatgttgaaagatcggagaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttg 9357783  T
Q  201 ggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagag 273  Q
    | ||||| ||||||| ||||   ||||| || |||||| |||||||||||||||||||||||||| |||||||    
T  9357784 gcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgataagag 9357856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 9316449 - 9316696
Alignment:
Q  18 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 117  Q
    ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |    
T  9316449 tcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagatt 9316548  T
Q  118 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 217  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| |    
T  9316549 caagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcat 9316648  T
Q  218 gaagcagatttggctattggaaatggcgaggaggccgttacatgaacc 265  Q
    |||   |||||| | ||||||||||||||| |||||||||||||||||    
T  9316649 gaaagcgatttgaccattggaaatggcgagaaggccgttacatgaacc 9316696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 9329020 - 9329301
Alignment:
Q  18 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 117  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |    
T  9329020 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagatt 9329119  T
Q  118 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 217  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| ||| ||| ||| | | |    
T  9329120 caagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccct 9329219  T
Q  218 gaagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtgatagga 299  Q
     ||   |||||||| || ||| || || | ||||||||| |||||||| ||||||  ||||  |||| ||||||||| ||||    
T  9329220 aaaagcgatttggccataggagatagcaatgaggccgttgcatgaaccgataagacccatgttgctgttacgcgtgacagga 9329301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 10353553 - 10353797
Alignment:
Q  29 agagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtta 128  Q
    ||||||||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  |||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  129 gggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagattt 228  Q
    ||||||| ||||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    |||     
T  10353653 gggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctatta 10353752  T
Q  229 ggctattggaaatggcgaggaggccgttacatgaaccaataagag 273  Q
     ||  | ||| |||||||||||||||||||||||||| |||||||    
T  10353753 cgccgtgggacatggcgaggaggccgttacatgaaccgataagag 10353797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 9321399 - 9321657
Alignment:
Q  20 ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactc 118  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || ||    
T  9321399 ggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattc 9321497  T
Q  119 aagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtg 218  Q
     | ||||| |||||||| |||||| || |||||||| || | ||| ||| ||||| |||||||| ||| |||||||||||| |||  || ||||||  ||    
T  9321498 cataatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattg 9321597  T
Q  219 aagcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 278  Q
    ||    | |||||  | ||| |||||||||||||||||||| ||||| ||||||| ||||    
T  9321598 aaagccagttggccgtgggagatggcgaggaggccgttacaggaaccgataagagccatg 9321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 9060836 - 9060588
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 125  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatg 9060737  T
Q  126 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 225  Q
    |||||||||| |||||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||  |  | | | ||| ||| ||||    |    
T  9060736 ttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcgagaacgccatgagggtgcttgaaaacaa 9060637  T
Q  226 tttggctattggaaatggcgaggaggccgttacatgaaccaataagagg 274  Q
    |||  |  | ||||| |||||||||||||||||||||||||||||||||    
T  9060636 tttctccgtcggaaagggcgaggaggccgttacatgaaccaataagagg 9060588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 120 - 294
Target Start/End: Original strand, 9275044 - 9275218
Alignment:
Q  120 agaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 219  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
Q  220 agcagatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggtacgcgtga 294  Q
    ||  | |||||| |||||| || || | |||||||||||||||||| ||||||| ||||  |||| |||||||||    
T  9275144 aggcggtttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgttacgcgtga 9275218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 127 - 273
Target Start/End: Original strand, 10348312 - 10348458
Alignment:
Q  127 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 226  Q
    |||| |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||   |||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 10348411  T
Q  227 ttggctattggaaatggcgaggaggccgttacatgaaccaataagag 273  Q
    |   |   |||| |||||||||||||||||||||||||| |||||||    
T  10348412 tacccctgtggagatggcgaggaggccgttacatgaaccgataagag 10348458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 10336273 - 10336337
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 90  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 8573200 - 8573142
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 84  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573200 ccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 10372391 - 10372460
Alignment:
Q  127 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 196  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 7115155 - 7115092
Alignment:
Q  224 gatttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatgaagctggta 287  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||  |||| ||||||||    
T  7115155 gatttggccattggagatggcgaggaggccgttacatgaaccgataagatccatggagctggta 7115092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  28 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 90  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 7115340 - 7115271
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 95  Q
    ||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 10348227 - 10348284
Alignment:
Q  33 attctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 90  Q
    |||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 9274916 - 9275000
Alignment:
Q  1 caaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 85  Q
    |||||||||||||||  || |||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||| || ||||||||    
T  9274916 caaaagagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 273
Target Start/End: Complemental strand, 8573100 - 8572959
Alignment:
Q  132 atagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggc 231  Q
    |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| || ||||| ||| | | | | ||| || || ||   ||||   |    
T  8573100 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaac 8573001  T
Q  232 tattggaaatggcgaggaggccgttacatgaaccaataagag 273  Q
     ||| ||||||||||||||||||||||||||||| |||||||    
T  8573000 cattagaaatggcgaggaggccgttacatgaaccgataagag 8572959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 278
Target Start/End: Original strand, 37462927 - 37463179
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 125  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatg 37463026  T
Q  126 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 225  Q
    | ||||| ||  | |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   ||    
T  37463027 taagggacaggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcga 37463126  T
Q  226 tttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 278  Q
    |||||| |||||| || ||||||||||||||||||||||| ||||||| ||||    
T  37463127 tttggccattggagatagcgaggaggccgttacatgaaccgataagagccatg 37463179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 26575304 - 26575549
Alignment:
Q  28 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtt 127  Q
    |||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgtt 26575403  T
Q  128 agggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatt 227  Q
    |||||| | ||||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    |||    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccatt 26575503  T
Q  228 tggctattggaaatggcgaggaggccgttacatgaaccaataagag 273  Q
      ||  | ||| |||||||||||||||||||||||||| |||||||    
T  26575504 acgccgtgggacatggcgaggaggccgttacatgaaccgataagag 26575549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 4912 - 4976
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 90  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 5018 - 5153
Alignment:
Q  138 agagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattg 236  Q
    ||||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  |||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttg 5116  T
Q  237 gaaatggcgaggaggccgttacatgaaccaataagag 273  Q
    |||| |||||||||||||||||||||||| |||||||    
T  5117 gaaacggcgaggaggccgttacatgaaccgataagag 5153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  26 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 88  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 41966310 - 41966185
Alignment:
Q  140 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaa 239  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| ||||||||| ||   | ||||||| |  | |||   ||||| || ||||||     
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgccattggag 41966211  T
Q  240 atggcgaggaggccgttacatgaacc 265  Q
    |||  |||||||||||||||||||||    
T  41966210 atgcagaggaggccgttacatgaacc 41966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  27 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 88  Q
    |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  27 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 85  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  27 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 84  Q
    ||||||||||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
Q  31 agattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 88  Q
    ||||| ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University