View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14189_low_5 (Length: 279)
Name: NF14189_low_5
Description: NF14189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14189_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 269
Target Start/End: Original strand, 55943420 - 55943661
Alignment:
| Q |
30 |
gacacaaaaaccttttgattttacttaaatgactttatcaattgtttctatttatctgattttgaaatattatcagtgcaagtgatatgatttttctct- |
128 |
Q |
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| T |
55943420 |
gacacaaaaaccttttgattttacttaaatgactttatcaattgtttctatttatctgattttgaaacattatcagtgcaagtgatatgatttttctctt |
55943519 |
T |
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| Q |
129 |
-gtttaataacaggtcacggctcttgcaagtttgagtatatcccttgaatggagtttggggtaatttattttttcaaagtgaagacagtaatgaagtcaa |
227 |
Q |
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| T |
55943520 |
tgtttaataacaggtcacggctcttgcaagtttgagtatatcccttgaatggagtttggggtaatttattttttcaaagtgaagacagtaatgaagtcaa |
55943619 |
T |
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| Q |
228 |
tgaaatgttctgtctgcatttcttaaattgttgttgtttcat |
269 |
Q |
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| T |
55943620 |
tgaaatgttctgtctgcatttcttcaattgttgttgtttcat |
55943661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 86 - 269
Target Start/End: Original strand, 55946644 - 55946828
Alignment:
| Q |
86 |
tgattttgaaatattatcagtgcaagtgatatgatttttctctgttt-aataacaggtcacggctcttgcaagtttgagtatatcccttgaatggagttt |
184 |
Q |
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| T |
55946644 |
tgattttgaaaaattatcagtgcaaatgatatctattctctttgtttcaatggcaggtcatggatcatgcaagtttgagtataacccttgaatgaagttt |
55946743 |
T |
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| Q |
185 |
ggggtaatttattttttcaaagtgaagacagtaatgaagtcaatgaaatgttctgtctgcatttcttaaattgttgttgtttcat |
269 |
Q |
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| T |
55946744 |
agagtaatatgatttctcaaagtgaagacagtaataaagtcaatgaaatgttctgtctgcgtctcttaaattgctgttgtttcat |
55946828 |
T |
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