View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_high_1 (Length: 582)
Name: NF1418_high_1
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 34302332 - 34302115
Alignment:
| Q |
41 |
tttatattgcagtattttgaaccagtgttccctattatcccagagaaatattggattgataccatagaagcttacaaatgtgtgaaatcacatctaaaga |
140 |
Q |
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| T |
34302332 |
tttatattgcagatttttgaaccggtgttccccattattccagaaaaatattggattgatactatagaagcttacaaatgtgtgaaatcacatctaaaga |
34302233 |
T |
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| Q |
141 |
aggttgagattaagggcttcaagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaattt |
240 |
Q |
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| T |
34302232 |
aggtcgagattacgggcttcaagagaactaaaaatgagctttgtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagtatcaattt |
34302133 |
T |
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| Q |
241 |
acttaaagatgacgtgaa |
258 |
Q |
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| T |
34302132 |
acttaaaggtgacgtgaa |
34302115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 34296869 - 34296717
Alignment:
| Q |
12 |
aagaattaagacattgaactttatttttgtttatattgcagtattttgaaccagtgttccctattatcccagagaaatattggattgataccatagaagc |
111 |
Q |
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| T |
34296869 |
aagaattaagacattgaactttatttttgtttatattgcagttttttgaaccagtgttccctattatcccagagaaatattggattgatactatagaagc |
34296770 |
T |
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| Q |
112 |
ttacaaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaagg |
164 |
Q |
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| T |
34296769 |
ttacaaatgtgtgaaatcacatctaaaaaaggttgagattaagggcttcaagg |
34296717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 34281268 - 34281047
Alignment:
| Q |
18 |
taagacattgaactttatttttgtttatattgcagtattttgaaccagtgttccctattatcccagagaaatattggattgata---ccatagaagctta |
114 |
Q |
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| T |
34281268 |
taagacattggactgtattgttgtttatattgcagatttttgaacca----------ttattccagaaaaatattggattgataatactatagaagctta |
34281179 |
T |
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| Q |
115 |
caaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggag |
214 |
Q |
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| T |
34281178 |
caaatgtgtgaaatcacatctaaagaaggtcgagattacgggcttcaagggaactagaaatgagcttaatg-gattacttacttcctcattcgtgaggag |
34281080 |
T |
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| Q |
215 |
acgttaagaaagatgagcatcaatttacttaaa |
247 |
Q |
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| T |
34281079 |
accttaaggaagatgagcattaatttacttaaa |
34281047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 34289687 - 34289591
Alignment:
| Q |
266 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
362 |
Q |
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| T |
34289687 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 160 - 268
Target Start/End: Complemental strand, 34289826 - 34289718
Alignment:
| Q |
160 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaagatgacgtgaaa |
259 |
Q |
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| T |
34289826 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggaggccttaagaaagatgagcatcaatttacttaaagatgacatgaaa |
34289727 |
T |
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| Q |
260 |
gaagaggct |
268 |
Q |
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| T |
34289726 |
gaagaggct |
34289718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 266 - 362
Target Start/End: Complemental strand, 34302074 - 34301978
Alignment:
| Q |
266 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
362 |
Q |
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| T |
34302074 |
gctagatctttactgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 491
Target Start/End: Complemental strand, 34289525 - 34289462
Alignment:
| Q |
428 |
cttgtgaaagacttttatttggaattgattttagtgttttatcaataatacaaatgacccctcg |
491 |
Q |
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| T |
34289525 |
cttgtgtaagacttttatttggaattgattttactgttttatcaataatacaaatgacccctcg |
34289462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 473
Target Start/End: Complemental strand, 34301900 - 34301866
Alignment:
| Q |
439 |
cttttatttggaattgattttagtgttttatcaat |
473 |
Q |
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| T |
34301900 |
cttttatttggaattgattttagtgttttatcaat |
34301866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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