View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_high_11 (Length: 270)
Name: NF1418_high_11
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 42777869 - 42778107
Alignment:
| Q |
19 |
tcatataaaaatcggaaattgtataaatat---gttgatattagatttagnnnnnnnnttcctccaatgttaaatgtggttcaaaaagagatgaaaagag |
115 |
Q |
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| T |
42777869 |
tcatataaaaatcggaaattgtataaatataatgttgatattagatttagaaaaaaaattcctccaatgttaaatgtggttcaaaaagagatgaaaagag |
42777968 |
T |
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| Q |
116 |
tgcacaattaaagcatctttgattgtaggaatcaatttgaggtatcaactcttaatttaaaacttaacctgttttcactcaaatacacgaacaattagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42777969 |
tgcacaattaaagcatctttgattgtaggaatcaatttgaggtatcaactcttaatttaaaacttaacctgttttcactcaaatacacgaacaattagag |
42778068 |
T |
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| Q |
216 |
ttcacaacttatgttttagtggatgatgatgcaaaaaat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42778069 |
ttcacaacttatgttttagtggatgatgatgcaaaaaat |
42778107 |
T |
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