View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1418_high_18 (Length: 246)

Name: NF1418_high_18
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1418_high_18
NF1418_high_18
[»] chr7 (2 HSPs)
chr7 (7-103)||(1293416-1293512)
chr7 (119-242)||(1292121-1292246)
[»] chr5 (3 HSPs)
chr5 (184-237)||(35695231-35695284)
chr5 (184-242)||(4460463-4460521)
chr5 (179-237)||(29663368-29663426)
[»] chr4 (1 HSPs)
chr4 (186-233)||(35518681-35518728)
[»] chr8 (1 HSPs)
chr8 (183-224)||(40038946-40038987)
[»] chr2 (1 HSPs)
chr2 (180-217)||(33201204-33201241)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 1293512 - 1293416
Alignment:
Q  7 ttagaagttttgtatagccaaatttaatacaatatcatatgttgaaatttcatgatttatccaacaattcattcatatcaattttatgattcatatc 103  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  1293512 ttagaagttttgtatagtcaaatttaatacaatatcaaatgtttaaatttcatgatttatccaacgatttattcatatcaattttatgattcatatc 1293416  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 1292246 - 1292121
Alignment:
Q  119 gattcttatctaa--ctatttttatatctatactatatatnnnnnnnnnntatgattatagactgattttttcacttccaattatactctttaacaaatt 216  Q
    |||||||||||||  ||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1292246 gattcttatctaaatctatttttatatctatactgtatataaagaaaatatatgattatagactgattttttcacttccaattatactctttaacaaatt 1292147  T
Q  217 tacttatacgaatgctatattcttgg 242  Q
    |||||||| |||||||||||| ||||    
T  1292146 tacttataagaatgctatattgttgg 1292121  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 35695231 - 35695284
Alignment:
Q  184 tttttcacttccaattatactctttaacaaatttacttatacgaatgctatatt 237  Q
    |||||||||||||||||||| ||| ||||||||| | |||| ||||||||||||    
T  35695231 tttttcacttccaattatacccttaaacaaatttgcatataagaatgctatatt 35695284  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 4460463 - 4460521
Alignment:
Q  184 tttttcacttccaattatactctttaacaaatttacttatacgaatgctatattcttgg 242  Q
    |||||||||||||||||||| ||| |||||| |||| ||||  ||||||||||| ||||    
T  4460463 tttttcacttccaattatacccttaaacaaaattacctataaaaatgctatattgttgg 4460521  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 29663368 - 29663426
Alignment:
Q  179 ctgattttttcacttccaattatactctttaacaaatttacttatacgaatgctatatt 237  Q
    |||||||||||||||||||||||| || | |||||||||   |||| ||||||||||||    
T  29663368 ctgattttttcacttccaattataatcctaaacaaatttgtgtataagaatgctatatt 29663426  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 35518681 - 35518728
Alignment:
Q  186 tttcacttccaattatactctttaacaaatttacttatacgaatgcta 233  Q
    ||||||||||||||||| |||| ||||||||| |||||| ||||||||    
T  35518681 tttcacttccaattatattcttaaacaaattttcttataagaatgcta 35518728  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 40038987 - 40038946
Alignment:
Q  183 ttttttcacttccaattatactctttaacaaatttacttata 224  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  40038987 ttttttcacttccaattatacacttaaacaaatttacatata 40038946  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 33201204 - 33201241
Alignment:
Q  180 tgattttttcacttccaattatactctttaacaaattt 217  Q
    |||||||||||||||||||||||  |||||||||||||    
T  33201204 tgattttttcacttccaattatatcctttaacaaattt 33201241  T

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