View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_high_5 (Length: 409)
Name: NF1418_high_5
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 181 - 402
Target Start/End: Complemental strand, 2245992 - 2245771
Alignment:
| Q |
181 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccgaaacccaacttagttggatctttcaaatttggaaa |
280 |
Q |
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| T |
2245992 |
gacaaatagcttgaattttagcatcaacagaattcttcaaagcattcaatctagtagaatctccaaaacccaacttagttggatctttcaaatttggaaa |
2245893 |
T |
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| Q |
281 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245892 |
atttaaacgcgcgtattcgcctcgaagcttataagctgcacgatcataagcataagctgcagcttcagcagtttcataagttccaagccaaactctcatt |
2245793 |
T |
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| Q |
381 |
ctattctgaggaagtataatct |
402 |
Q |
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||||||||||||||| |||||| |
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| T |
2245792 |
ctattctgaggaagtctaatct |
2245771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2246172 - 2246022
Alignment:
| Q |
1 |
cccaatcatcacaaaaaacaagtggtgaaagcggtaacgaagacgaagaagaagaacaagaagatgagttaataatcttgtctgaatttttatcactctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246172 |
cccaatcatcacaaaaaacaagtggtgaaagcggtaacgaagacgaagaagaagaacaagaagatgagttaataatcttgtctgaatttttatcactctt |
2246073 |
T |
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| Q |
101 |
tgtatcatgattattactacctgaattcttcttcatcttctttgcagcaat |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246072 |
tgtatcatgattattactacctgaattcttcttcatcttctttgcagcaat |
2246022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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