View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1418_high_7 (Length: 389)
Name: NF1418_high_7
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_high_7 |
 | |
|
| [»] scaffold0219 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0219 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 10849 - 10725
Alignment:
| Q |
11 |
gtaaattattcttgcaagcttccacaccttgatcataaacttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10849 |
gtaaattattcttgcaagcttccacaccttgatcataaacttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaa |
10750 |
T |
|
| Q |
111 |
aaagagatcatcaaaattaacaagg |
135 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10749 |
aaagagatcatcaaaattaacaagg |
10725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 15697916 - 15697808
Alignment:
| Q |
30 |
ttccacaccttgatcataaa-cttgtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcatgaaaaagagatcatcaaaatt |
128 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||||||| ||||||||||| ||||||||||||||| |||| |||||| |||||| | | |||||||||||||| |
|
|
| T |
15697916 |
ttccacacctcgattataagtcttgtgtgagtttaatgcaaactgagtcccctttgatgcaaagtttcagtaatagcatgagagatagatcatcaaaatt |
15697817 |
T |
|
| Q |
129 |
aacaagggc |
137 |
Q |
| |
|
|||||||| |
|
|
| T |
15697816 |
tacaagggc |
15697808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 18711341 - 18711195
Alignment:
| Q |
11 |
gtaaattattcttgcaagcttccacaccttgatcataaactt---gtctgagtttgatgcaaactgaatcccctttgatgcaaggtttaagtaattgcat |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||||| || ||||||| ||||||| |||||||||||||||||| ||||| |||||| | |
|
|
| T |
18711341 |
gtaaattgttcttgcaaccttccacaccgcgatcataaacttcttgtatgagtttaatgcaaattgaatcccctttgatgcagggtttcgataattgagt |
18711242 |
T |
|
| Q |
108 |
gaaaaagagatcatcaaaattaacaagggcttgtgcgaaagaacaag |
154 |
Q |
| |
|
||| |||||||| | |||||| || ||||||||||| ||||||| |
|
|
| T |
18711241 |
gaaggcgagatcattagaattaaatagagcttgtgcgaaggaacaag |
18711195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University